Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09378_v3 Cicer arietinum L. HOM05D002930 ORTHO05D003283 0.0e+00 2732.2 1409 100.0
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 0.0e+00 2204.1 1696 71.5
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 0.0e+00 2192.5 1686 71.6
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 0.0e+00 2180.6 1696 71.4
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 0.0e+00 2027.3 1698 67.0
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 2019.2 1699 66.3
Phvul.006G095000 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1993.8 1701 64.9
VMungo0540G0500 Vigna mungo HOM05D002930 ORTHO05D003283 0.0e+00 1993.0 1698 64.5
arahy.Tifrunner.gnm1.ann1.HQA39L Arachis hypogaea HOM05D002930 ORTHO05D003283 0.0e+00 1824.3 1704 60.6
arahy.Tifrunner.gnm1.ann1.MJP89X Arachis hypogaea HOM05D002930 ORTHO05D003283 0.0e+00 1711.0 1706 58.1
Lalb_Chr04g0260861 Lupinus albus HOM05D002930 ORTHO05D003283 0.0e+00 1516.5 1327 65.0
TAR365G0233 Trochodendron aralioides HOM05D002930 ORTHO05D003283 0.0e+00 1449.1 1700 50.0
Dinv40246 Davidia involucrata HOM05D002930 ORTHO05D003283 0.0e+00 1447.2 1598 52.8
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 0.0e+00 1424.1 1707 49.8
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 0.0e+00 1422.9 1720 48.8
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 0.0e+00 1400.2 1710 49.4
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 0.0e+00 1389.8 1718 47.5
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 0.0e+00 1389.8 1706 47.9
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 0.0e+00 1389.0 1711 49.4
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 0.0e+00 1375.5 1723 47.8
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 0.0e+00 1372.8 1724 46.9
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 0.0e+00 1370.1 1718 47.9
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 0.0e+00 1367.4 1705 48.2
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 0.0e+00 1366.7 1717 46.5
CiPaw.07G096000 Carya illinoinensis HOM05D002930 ORTHO05D003283 0.0e+00 1366.3 1719 47.1
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 0.0e+00 1364.4 1716 47.0
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 0.0e+00 1360.1 1721 46.9
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 0.0e+00 1351.7 1721 46.9
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 0.0e+00 1350.9 1714 46.8
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 0.0e+00 1350.5 1711 46.8
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 0.0e+00 1347.4 1713 46.6
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 0.0e+00 1345.9 1716 46.7
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 0.0e+00 1345.5 1710 47.1
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 0.0e+00 1345.1 1719 47.3
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 0.0e+00 1344.3 1713 47.6
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1341.6 1708 46.9
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1340.9 1720 46.5
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1338.6 1712 48.0
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1337.0 1721 46.6
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1334.3 1722 47.3
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 0.0e+00 1334.3 1711 46.1
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1331.6 1723 46.3
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 0.0e+00 1330.9 1710 47.3
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1328.9 1717 45.9
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 0.0e+00 1328.2 1711 46.3
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 0.0e+00 1325.5 1713 46.5
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 0.0e+00 1325.5 1661 47.7
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1325.1 1720 46.2
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 0.0e+00 1323.1 1714 46.4
Manes.05G071700 Manihot esculenta HOM05D002930 ORTHO05D003283 0.0e+00 1322.8 1690 47.1
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 0.0e+00 1317.8 1714 46.4
VMungo0720G1730 Vigna mungo HOM05D002930 ORTHO05D003283 0.0e+00 1317.8 1720 45.9
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 0.0e+00 1317.0 1711 45.6
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1317.0 1717 46.2
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1316.6 1711 45.8
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 0.0e+00 1315.4 1718 46.7
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1314.7 1711 45.6
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 0.0e+00 1314.7 1721 45.6
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1314.7 1717 45.6
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 0.0e+00 1314.7 1715 46.8
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 0.0e+00 1314.3 1718 46.6
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 0.0e+00 1313.5 1715 46.8
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 0.0e+00 1313.5 1714 46.4
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 0.0e+00 1312.4 1719 46.7
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 0.0e+00 1312.4 1753 45.7
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 0.0e+00 1310.4 1717 46.5
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 0.0e+00 1310.4 1717 46.5
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1309.7 1735 45.4
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 0.0e+00 1309.7 1717 45.7
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 0.0e+00 1308.9 1690 45.5
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 0.0e+00 1308.1 1738 46.3
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 0.0e+00 1308.1 1719 46.8
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 0.0e+00 1306.2 1718 46.6
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 0.0e+00 1305.0 1714 46.4
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 0.0e+00 1304.7 1716 45.9
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 0.0e+00 1302.7 1685 46.9
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1302.3 1711 45.5
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 0.0e+00 1297.0 1708 46.4
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 0.0e+00 1296.6 1741 46.1
Gohir.D13G110000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1295.8 1616 48.6
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 0.0e+00 1294.3 1719 45.5
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 0.0e+00 1293.5 1708 45.4
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 0.0e+00 1290.4 1709 45.9
Psat6g169840 Pisum sativum HOM05D002930 ORTHO05D003283 0.0e+00 1289.2 1635 46.9
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 0.0e+00 1284.6 1709 46.4
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 0.0e+00 1283.9 1708 45.3
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 0.0e+00 1282.3 1691 47.6
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 0.0e+00 1281.9 1717 45.4
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 0.0e+00 1280.0 1705 45.7
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1276.5 1716 44.9
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1275.0 1716 44.9
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 0.0e+00 1274.2 1712 45.2
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 0.0e+00 1271.5 1715 45.6
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 0.0e+00 1269.2 1689 45.8
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 0.0e+00 1268.1 1717 45.5
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 0.0e+00 1267.7 1707 45.5
Hma1.2p1_2318F.1_g319800 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 0.0e+00 1266.1 1574 47.6
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 0.0e+00 1262.7 1714 44.9
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 0.0e+00 1256.9 1718 44.4
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 0.0e+00 1256.1 1714 44.4
arahy.Tifrunner.gnm1.ann1.M1RB0X Arachis hypogaea HOM05D002930 ORTHO05D003283 0.0e+00 1255.4 1683 45.4
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 0.0e+00 1250.7 1718 44.9
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 0.0e+00 1249.2 1662 45.4
Hund05360 Selenicereus undatus HOM05D002930 ORTHO05D003283 0.0e+00 1249.2 1608 46.3
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 0.0e+00 1248.8 1704 44.4
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 0.0e+00 1245.0 1710 44.0
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 0.0e+00 1244.6 1681 45.7
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 0.0e+00 1241.9 1719 44.7
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 0.0e+00 1221.5 1694 44.2
Lj9C680G12 Lonicera japonica HOM05D002930 ORTHO05D003283 0.0e+00 1216.1 1661 45.2
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 0.0e+00 1210.7 1501 47.6
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 0.0e+00 1201.8 1336 51.8
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 0.0e+00 1197.2 1714 43.6
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1194.5 1712 43.2
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 0.0e+00 1191.4 1749 42.3
Sed0024970 Sechium edule HOM05D002930 ORTHO05D003283 0.0e+00 1174.8 1589 45.1
AUR62033688 Chenopodium quinoa HOM05D002930 ORTHO05D003283 0.0e+00 1173.7 1731 42.1
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 0.0e+00 1167.9 1314 51.6
DCAR_022250 Daucus carota HOM05D002930 ORTHO05D003283 0.0e+00 1165.2 1716 42.2
unitig_744.g24487 Utricularia gibba HOM05D002930 ORTHO05D003283 0.0e+00 1163.7 1656 43.5
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 0.0e+00 1163.3 1708 42.7
MBI19_g21645_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 0.0e+00 1161.7 1650 43.5
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 0.0e+00 1151.3 1718 41.9
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 0.0e+00 1149.0 1714 41.9
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1119.4 1619 43.7
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1110.9 1708 41.6
Ciclev10018445m.g Citrus clementina HOM05D002930 ORTHO05D003283 0.0e+00 1104.7 1694 42.6
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 0.0e+00 1104.7 1712 41.6
COL.COLO4_13526 Corchorus olitorius HOM05D002930 ORTHO05D003283 0.0e+00 1097.0 1427 47.3
CSS0031973 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 9.6e-312 1073.5 1312 48.6
DCAR_012456 Daucus carota HOM05D002930 ORTHO05D003283 6.2e-309 1064.7 1525 43.5
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 1.0e-303 1047.3 1602 41.4
Hma1.2p1_0628F.1_g191750 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 1.6e-301 1040.0 1767 39.4
HPP92_025233 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.6e-301 1040.0 1735 39.8
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 9.3e-281 971.1 1045 52.4
Gohir.D08G203100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.5e-272 942.6 1315 44.3
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 1.4e-268 930.6 1651 37.9
Cpa.g.sc9.131 Carica papaya HOM05D002930 ORTHO05D003283 1.4e-257 894.0 1352 42.9
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 2.7e-256 889.8 1267 43.7
Gohir.A08G184980 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.2e-235 821.2 817 54.6
HPP92_017201 Vanilla planifolia HOM05D002930 ORTHO05D003283 3.8e-234 816.2 1298 41.1
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 2.0e-219 767.3 822 50.4
SHI15439 Sapria himalayana HOM05D002930 ORTHO05D003283 1.0e-215 755.0 1614 35.6
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 4.7e-208 729.6 1703 32.2
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 6.1e-208 729.2 1738 30.8
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 1.8e-199 701.0 1702 30.5
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 1.4e-191 674.9 1793 29.6
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 1.7e-181 641.3 797 45.8
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 7.3e-169 599.4 1603 30.6
Rhsim01G0277800 Rhododendron simsii HOM05D002930 ORTHO05D003283 2.3e-138 498.0 775 40.8
arahy.Tifrunner.gnm1.ann1.K2UAY4 Arachis hypogaea HOM05D002930 ORTHO05D003283 3.1e-135 487.6 825 40.0
Lalb_Chr04g0260851 Lupinus albus HOM05D002930 ORTHO05D003283 7.7e-134 483.0 368 69.0
Aqoxy211s003 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 4.5e-118 430.6 465 54.8
CDE08G1581 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 1.3e-104 386.0 663 40.3
QL03p004167 Quercus lobata HOM05D002930 ORTHO05D003283 3.7e-80 304.7 317 57.1
Gohir.A08G184940 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.1e-74 286.6 651 34.7
Cpa.g.sc9.130 Carica papaya HOM05D002930 ORTHO05D003283 1.2e-67 263.1 388 42.8
CBR_g45306 Chara braunii HOM05D002930 ORTHO05D000002 1.6e-62 246.1 812 27.5
HPP92_027329 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.3e-59 236.5 289 46.0
Actinidia21089 Actinidia chinensis HOM05D002930 ORTHO05D003283 2.8e-59 235.3 176 65.3
A04p35160 Brassica napus HOM05D002930 ORTHO05D003283 5.4e-55 221.1 203 55.7
Aqoxy211s002 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 2.6e-49 202.2 196 55.1
Aqoxy211s001 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 2.4e-47 195.7 214 49.5
Aqoxy211s005 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.9e-44 186.0 146 66.4
HPP92_017200 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.3e-43 183.3 226 46.0
Psat6g102000 Pisum sativum HOM05D002930 ORTHO05D003283 1.9e-31 142.9 87 77.0
Psat3g168760 Pisum sativum HOM05D002930 ORTHO05D003283 5.5e-23 114.8 185 36.8
VMungo0647G1745 Vigna mungo HOM05D002930 ORTHO05D003283 8.2e-19 100.9 120 46.7
Psat6g169880 Pisum sativum HOM05D002930 ORTHO05D003283 9.1e-10 70.9 57 54.4
Actinidia24871 Actinidia chinensis HOM05D002930 ORTHO05D003283 2.6e-09 69.3 68 51.5
DCAR_012455 Daucus carota HOM05D002930 ORTHO05D003283 1.1e-07 63.9 57 49.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.9e-07 63.2 39 71.8
Psat0s4353g0080 Pisum sativum HOM05D025452 ORTHO05D018004 2.5e-07 62.8 62 59.7
CBR_g45308 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-06 59.7 147 32.7


User provided reference genes

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