Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.2e-29 132.5 68 100.0
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.3e-26 122.5 65 93.8
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 8.2e-26 119.8 65 92.3
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 3.6e-21 104.4 64 79.7
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 6.1e-21 103.6 66 75.8
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 8.0e-21 103.2 66 75.8
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.0e-20 102.8 66 78.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.4e-20 102.4 66 72.7
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.8e-20 102.1 66 72.7
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.3e-20 101.7 66 77.3
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.0e-20 101.3 66 77.3
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 4.0e-20 100.9 63 79.4
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 5.2e-20 100.5 66 77.3
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 5.2e-20 100.5 66 77.3
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 8.8e-20 99.8 59 83.1
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 8.8e-20 99.8 66 75.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.5e-19 99.0 59 79.7
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.6e-19 98.2 66 74.2
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 3.4e-19 97.8 65 73.8
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.4e-19 97.8 66 74.2
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 7.5e-19 96.7 59 76.3
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 7.5e-19 96.7 59 76.3
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 7.5e-19 96.7 62 74.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 7.5e-19 96.7 59 76.3
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 9.7e-19 96.3 59 78.0
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 9.7e-19 96.3 59 78.0
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 9.7e-19 96.3 59 78.0
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 9.7e-19 96.3 59 76.3
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 9.7e-19 96.3 66 71.2
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.3e-18 95.9 59 76.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-18 95.9 59 76.3
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-18 95.9 59 76.3
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.3e-18 95.9 59 76.3
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.3e-18 95.9 59 76.3
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.3e-18 95.9 59 76.3
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.3e-18 95.9 65 73.8
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.7e-18 95.5 59 76.3
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.7e-18 95.5 62 74.2
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.2e-18 95.1 59 76.3
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.2e-18 95.1 59 74.6
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.2e-18 95.1 58 77.6
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.8e-18 94.7 62 71.0
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.8e-18 94.7 62 71.0
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.8e-18 94.7 59 74.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 3.7e-18 94.4 66 74.2
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 3.7e-18 94.4 59 74.6
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 4.8e-18 94.0 59 74.6
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 4.8e-18 94.0 66 72.7
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 4.8e-18 94.0 59 74.6
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 6.3e-18 93.6 66 69.7
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 8.3e-18 93.2 59 78.0
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 8.3e-18 93.2 62 72.6
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.3e-18 93.2 58 75.9
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.1e-17 92.8 59 74.6
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-17 92.8 59 74.6
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-17 92.8 59 74.6
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-17 92.8 59 74.6
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.1e-17 92.8 66 68.2
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.1e-17 92.8 66 71.2
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-17 92.4 62 69.4
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-17 92.4 62 71.0
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.4e-17 92.4 62 71.0
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.8e-17 92.0 59 74.6
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.8e-17 92.0 66 69.7
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.8e-17 92.0 66 69.7
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.8e-17 92.0 62 72.6
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 3.1e-17 91.3 59 74.6
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.1e-17 91.3 66 68.2
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 4.1e-17 90.9 62 72.6
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 4.1e-17 90.9 59 74.6
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 4.1e-17 90.9 59 74.6
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 4.1e-17 90.9 59 72.9
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 5.3e-17 90.5 67 71.6
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 7.0e-17 90.1 58 72.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 7.0e-17 90.1 66 69.7
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 9.1e-17 89.7 59 72.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 9.1e-17 89.7 59 74.6
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.2e-16 89.4 58 72.4
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.2e-16 89.4 57 71.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-16 89.4 66 66.7
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.2e-16 89.4 63 66.7
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.2e-16 89.4 58 72.4
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.6e-16 89.0 67 70.1
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.0e-16 88.6 67 64.2
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.7e-16 88.2 60 71.7
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.7e-16 88.2 66 68.2
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.7e-16 88.2 62 67.7
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 2.7e-16 88.2 59 72.9
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.5e-16 87.8 59 71.2
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 3.5e-16 87.8 59 71.2
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 4.5e-16 87.4 62 67.7
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 4.5e-16 87.4 66 65.2
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 5.9e-16 87.0 60 66.7
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 5.9e-16 87.0 66 68.2
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.7e-16 86.7 62 67.7
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 7.7e-16 86.7 59 71.2
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 7.7e-16 86.7 59 71.2
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.0e-15 86.3 77 59.7
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.0e-15 86.3 57 71.9
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-15 86.3 58 70.7
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.3e-15 85.9 57 71.9
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-15 85.5 62 66.1
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 2.2e-15 85.1 66 65.2
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.9e-15 84.7 67 67.2
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 3.8e-15 84.3 59 69.5
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 5.0e-15 84.0 59 71.2
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.9e-14 82.0 61 70.5
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 5.5e-14 80.5 57 68.4
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 9.4e-14 79.7 60 71.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.1e-13 78.6 59 62.7
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.1e-13 78.6 45 82.2
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 6.1e-13 77.0 55 69.1
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.4e-12 75.9 60 63.3
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.8e-12 75.5 54 66.7
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.3e-12 75.1 44 81.8
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 3.0e-12 74.7 44 81.8
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 5.2e-12 73.9 44 81.8
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 6.8e-12 73.6 62 64.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.6e-11 71.6 55 67.3
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.4e-11 71.2 58 63.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 4.4e-11 70.9 62 62.9
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 2.2e-10 68.6 59 62.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.8e-10 67.4 55 63.6
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 5.9e-08 60.5 59 57.6
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.7e-07 58.9 64 56.2
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.9e-07 58.2 62 54.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.8e-07 57.8 60 53.3
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.5e-06 55.8 57 54.4


User provided reference genes

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