Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.2e-158 562.4 314 100.0
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 7.0e-96 354.8 342 67.3
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 3.0e-78 296.2 371 56.1
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.4e-67 260.0 310 54.2
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.0e-66 256.9 314 56.4
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-65 253.8 320 54.7
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 8.4e-65 251.5 328 55.8
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 8.4e-65 251.5 314 53.5
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 4.2e-64 249.2 313 53.7
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 5.4e-64 248.8 316 59.2
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 7.8e-63 245.0 312 56.4
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.0e-62 243.0 312 53.8
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.0e-62 243.0 307 53.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.1e-61 241.1 318 54.7
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.9e-61 240.4 329 50.2
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 7.3e-61 238.4 310 52.6
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 3.6e-60 236.1 313 51.4
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 6.2e-60 235.3 310 51.3
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 8.1e-60 235.0 312 54.5
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 8.1e-60 235.0 306 52.6
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 5.3e-59 232.3 285 55.4
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 5.3e-59 232.3 310 52.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 6.9e-59 231.9 311 52.4
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.2e-58 231.1 312 50.0
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.2e-58 231.1 310 51.6
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.5e-58 230.7 317 53.3
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.5e-58 230.7 311 52.4
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 3.4e-58 229.6 322 52.5
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.9e-57 226.5 315 55.9
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.4e-57 224.9 296 53.0
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.1e-56 224.6 319 51.1
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.4e-56 224.2 307 50.5
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.4e-56 224.2 314 48.7
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-56 223.8 296 52.7
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.9e-56 223.8 296 52.7
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.2e-56 222.6 307 50.2
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-56 222.6 310 50.6
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 4.2e-56 222.6 303 50.8
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 2.7e-55 219.9 345 48.1
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.7e-54 217.2 306 50.0
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.9e-54 216.1 331 49.2
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.1e-53 214.5 356 47.5
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 4.3e-53 212.6 305 50.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 7.4e-53 211.8 310 49.4
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.6e-52 210.7 307 50.2
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.6e-52 210.7 307 50.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.1e-51 208.0 310 49.4
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.1e-51 208.0 297 51.5
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.4e-51 206.8 315 46.7
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 3.1e-51 206.5 317 45.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.3e-51 205.7 331 47.7
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 9.0e-51 204.9 318 47.2
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.0e-50 203.8 305 48.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.0e-50 203.8 318 46.5
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.6e-50 203.4 313 50.8
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 2.9e-49 199.9 321 45.8
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 3.8e-49 199.5 314 47.8
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.8e-49 199.5 336 45.5
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.4e-48 196.8 324 48.1
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 5.5e-48 195.7 311 45.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 9.3e-48 194.9 315 46.0
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 6.0e-47 192.2 326 46.6
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.0e-46 191.4 332 44.9
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.1e-46 189.1 220 55.9
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.3e-45 186.4 318 45.3
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 5.6e-45 185.7 326 42.0
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 5.6e-45 185.7 317 45.7
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.4e-45 185.3 318 44.7
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.6e-44 184.1 373 40.8
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 2.8e-44 183.3 314 45.9
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 4.8e-44 182.6 319 44.2
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 6.2e-44 182.2 316 47.5
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 8.1e-44 181.8 332 41.0
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.4e-43 181.0 339 43.7
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.5e-42 177.6 293 43.7
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 2.0e-42 177.2 311 43.7
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.6e-42 176.8 352 40.9
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 3.4e-42 176.4 321 44.2
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.3e-41 174.5 339 43.1
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.3e-41 174.5 327 41.9
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 6.5e-41 172.2 327 42.5
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 8.4e-41 171.8 330 40.9
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 1.9e-40 170.6 318 43.4
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.5e-40 170.2 327 42.2
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 2.5e-40 170.2 366 39.3
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.2e-39 167.9 323 42.4
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.0e-38 164.9 318 44.3
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.3e-38 164.5 377 36.9
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.3e-38 164.5 171 57.9
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.8e-38 164.1 273 46.5
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 3.0e-38 163.3 171 57.9
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 3.9e-38 162.9 363 38.6
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 5.1e-38 162.5 374 37.4
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.5e-37 160.2 315 39.4
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 5.7e-37 159.1 382 38.7
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 2.1e-36 157.1 370 36.8
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 2.1e-36 157.1 309 41.4
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 8.2e-36 155.2 387 37.0
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.4e-35 153.7 359 37.9
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.4e-35 153.7 312 40.1
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.1e-35 153.3 370 35.4
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.1e-35 152.9 286 43.7
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.1e-35 152.9 312 41.0
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.5e-34 151.0 369 37.1
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.4e-34 149.8 289 43.3
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 7.6e-34 148.7 313 39.0
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.7e-33 147.5 288 39.2
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 2.2e-33 147.1 379 34.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 8.5e-33 145.2 400 35.2
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.9e-32 144.1 372 36.0
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.9e-32 144.1 372 36.0
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.1e-31 140.6 315 39.0
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 8.7e-30 135.2 363 34.7
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 8.7e-30 135.2 376 34.8
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.5e-29 134.4 316 36.1
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.7e-28 129.8 329 38.0
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 6.9e-27 125.6 316 36.1
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 6.5e-25 119.0 270 38.1
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 9.4e-24 115.2 332 34.0
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.7e-23 113.6 302 35.1
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.0e-22 111.7 289 36.7
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 5.1e-22 109.4 267 38.6
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.0e-21 107.5 288 34.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.7e-20 104.4 327 33.3
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.6e-15 87.8 307 34.2
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.3e-12 78.2 308 30.8
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.8e-12 77.0 176 39.2
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.4e-11 74.7 183 35.0
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 3.1e-11 73.6 161 40.4
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 7.0e-11 72.4 295 30.5
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 3.2e-08 63.5 100 46.0
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 7.2e-08 62.4 254 29.9
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 3.0e-06 57.0 97 40.2
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.8e-06 55.5 47 63.8
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.8e-06 55.5 47 63.8
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.8e-06 55.5 47 63.8
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.8e-06 55.5 47 63.8
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 8.8e-06 55.5 47 63.8


User provided reference genes

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