Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 2.2e-171 605.5 308 100.0
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 1.9e-130 469.5 312 77.6
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 7.3e-122 441.0 317 73.5
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 9.2e-117 424.1 309 73.8
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 1.6e-116 423.3 285 78.6
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 4.3e-114 415.2 308 71.8
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 9.6e-114 414.1 309 70.6
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.4e-112 410.2 309 69.9
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 2.1e-105 386.3 313 69.6
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 4.8e-105 385.2 313 69.6
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 3.1e-104 382.5 309 67.3
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 2.0e-103 379.8 309 66.7
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.5e-98 363.6 256 74.2
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 2.5e-98 362.8 311 64.0
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.2e-95 354.0 311 62.1
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 2.0e-95 353.2 310 60.0
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 2.6e-95 352.8 312 60.6
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.5e-95 352.1 310 63.2
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 5.8e-95 351.7 317 62.8
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 2.2e-94 349.7 316 61.7
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 8.4e-94 347.8 315 60.3
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 8.4e-94 347.8 314 60.5
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.1e-93 347.4 312 62.2
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 6.0e-92 341.7 311 61.1
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.0e-91 340.9 315 59.4
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.3e-91 340.5 315 58.4
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 1.8e-91 340.1 313 60.4
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 2.3e-91 339.7 317 61.2
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 2.3e-91 339.7 315 58.1
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.9e-91 339.0 317 59.0
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 6.7e-91 338.2 322 60.6
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.5e-90 336.3 315 57.5
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.3e-90 335.9 311 57.9
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 4.3e-90 335.5 314 57.6
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 4.3e-90 335.5 312 58.0
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 5.6e-90 335.1 317 56.8
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 9.6e-90 334.3 312 57.7
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.1e-89 333.2 312 57.7
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.1e-89 333.2 312 57.4
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.8e-89 332.0 311 59.8
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 4.8e-89 332.0 218 73.4
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 1.2e-87 327.4 313 56.5
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.2e-87 327.4 277 62.5
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.2e-87 327.4 315 59.0
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.5e-87 327.0 306 59.2
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.6e-87 326.2 283 64.3
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 2.6e-87 326.2 315 57.5
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 7.6e-87 324.7 313 58.1
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 7.6e-87 324.7 229 68.6
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 1.3e-86 323.9 315 58.4
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.7e-86 323.6 310 56.1
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 3.8e-86 322.4 311 55.9
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 4.9e-86 322.0 312 56.7
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 6.5e-86 321.6 299 59.5
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 6.5e-86 321.6 305 57.7
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 1.1e-85 320.9 306 58.5
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.9e-85 320.1 313 57.2
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.9e-85 320.1 302 58.9
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.9e-85 320.1 306 57.2
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.2e-85 319.3 317 55.2
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 1.2e-84 317.4 338 53.3
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.1e-84 316.6 302 57.9
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 2.1e-84 316.6 300 58.7
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.1e-84 316.6 312 56.4
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 3.5e-84 315.8 304 56.9
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 4.6e-84 315.5 248 63.7
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 6.0e-84 315.1 244 65.2
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 6.0e-84 315.1 313 55.9
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.8e-83 313.5 299 57.2
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 1.8e-83 313.5 211 74.4
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.8e-83 313.5 292 57.9
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 3.0e-83 312.8 220 68.2
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 3.9e-83 312.4 299 56.5
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 3.9e-83 312.4 299 56.5
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 5.1e-83 312.0 299 56.9
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.1e-82 310.8 311 55.3
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 1.5e-82 310.5 300 57.3
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.9e-82 310.1 299 57.5
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 7.4e-82 308.1 303 57.1
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.3e-81 307.4 311 56.6
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.2e-81 306.6 319 52.7
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.2e-81 306.6 309 56.6
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 3.7e-81 305.8 314 53.5
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 1.4e-80 303.9 234 64.1
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.8e-80 303.5 324 54.0
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.8e-80 303.5 251 60.2
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 3.1e-80 302.8 240 63.8
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 5.3e-80 302.0 207 70.0
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 2.0e-79 300.1 308 54.2
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.0e-79 300.1 207 69.6
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 2.0e-79 300.1 299 56.2
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 3.4e-79 299.3 299 57.9
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 5.9e-79 298.5 311 53.7
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 1.0e-78 297.7 344 51.2
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 1.3e-78 297.4 230 65.7
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 1.3e-78 297.4 225 63.1
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 2.2e-78 296.6 316 51.9
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 2.2e-78 296.6 209 67.0
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.9e-78 296.2 313 55.3
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 8.5e-78 294.7 322 51.2
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 4.2e-77 292.4 216 68.1
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 1.6e-76 290.4 295 55.9
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 2.1e-76 290.0 330 50.3
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 4.6e-76 288.9 242 57.9
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 7.9e-76 288.1 322 52.2
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.3e-75 286.6 304 54.9
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 3.9e-75 285.8 313 54.3
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 8.8e-75 284.6 280 52.1
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.5e-74 283.9 199 67.8
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.2e-68 264.2 274 54.7
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 3.6e-68 262.7 308 52.9
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 2.2e-65 253.4 287 50.9
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 3.5e-63 246.1 226 51.3
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 1.7e-62 243.8 236 50.8
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.4e-61 240.7 331 47.1
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 5.2e-59 232.3 204 57.8
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 1.1e-58 231.1 230 48.3
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.9e-53 213.8 179 61.5
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 3.2e-53 213.0 231 52.4
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.2e-45 186.0 167 53.3
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.7e-41 174.1 158 53.2
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 6.6e-38 162.2 107 72.9
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 6.6e-38 162.2 145 57.2
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.9e-37 160.6 137 65.0
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-33 147.1 84 81.0
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.8e-33 146.7 84 82.1
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 2.4e-32 143.7 205 38.5
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 8.6e-30 135.2 265 37.0
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.8e-27 127.5 125 48.8
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 2.3e-27 127.1 83 73.5
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 2.0e-26 124.0 155 36.1
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 3.4e-26 123.2 68 83.8
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 1.9e-24 117.5 200 33.0
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 8.3e-17 92.0 152 42.8
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.0e-14 85.1 56 71.4
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 2.5e-13 80.5 84 52.4
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.4e-10 70.1 95 49.5
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.1e-08 65.1 45 68.9
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 3.2e-08 63.5 35 82.9
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 4.1e-08 63.2 37 75.7
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 4.1e-08 63.2 86 46.5
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 6.0e-07 59.3 140 31.4
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 7.8e-07 58.9 28 89.3
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.0e-06 57.0 89 42.7


User provided reference genes

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