Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 6.4e-150 534.3 309 100.0
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 7.8e-132 474.2 309 88.7
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 2.0e-127 459.5 311 85.9
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 7.6e-127 457.6 309 82.8
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 3.6e-121 438.7 309 84.8
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 6.9e-120 434.5 309 82.8
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 6.6e-115 417.9 309 76.4
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 8.7e-115 417.5 309 76.7
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 7.3e-114 414.5 309 77.7
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 9.6e-114 414.1 309 81.2
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 6.2e-113 411.4 314 79.9
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 4.0e-112 408.7 309 78.0
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.3e-99 367.1 302 71.9
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 5.1e-99 365.2 323 69.3
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.1e-98 364.0 308 73.1
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 9.6e-98 360.9 310 71.3
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.1e-96 357.5 315 70.2
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.4e-96 357.1 310 73.9
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.4e-96 357.1 313 64.2
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 3.1e-96 355.9 308 70.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 2.0e-95 353.2 314 71.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 4.5e-95 352.1 308 65.3
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 4.5e-95 352.1 309 70.9
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.3e-94 350.5 308 64.6
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.2e-94 349.7 309 70.6
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 4.2e-93 345.5 311 70.1
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 5.5e-93 345.1 309 68.9
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 7.2e-93 344.7 309 66.7
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.6e-92 343.6 313 70.9
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.6e-92 343.6 309 68.0
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 7.9e-92 341.3 310 63.9
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.0e-91 339.3 323 62.8
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.0e-91 339.3 310 62.9
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 6.7e-91 338.2 309 68.9
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.1e-90 337.4 308 70.1
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.1e-90 337.4 309 60.8
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.5e-90 337.0 323 68.1
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 4.3e-90 335.5 311 69.5
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 7.4e-90 334.7 309 61.5
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 9.7e-90 334.3 311 69.1
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 9.7e-90 334.3 280 73.2
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.2e-89 333.2 308 64.9
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.8e-89 332.8 280 73.6
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 4.8e-89 332.0 341 63.9
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 8.2e-89 331.3 309 62.8
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.4e-88 330.5 311 68.8
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.4e-87 325.9 309 67.0
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 4.5e-87 325.5 263 76.4
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.3e-86 323.9 275 65.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.7e-86 323.6 309 63.4
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.2e-86 323.2 296 65.9
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 3.8e-86 322.4 308 65.3
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.1e-84 316.6 294 60.5
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.4e-83 313.9 311 66.9
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 6.7e-83 311.6 310 55.8
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 8.8e-83 311.2 294 59.9
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 3.3e-82 309.3 308 60.4
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.7e-81 307.0 316 57.3
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.2e-81 306.6 200 84.5
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 3.7e-81 305.8 293 61.8
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 5.3e-80 302.0 226 81.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 5.3e-80 302.0 295 58.6
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.5e-79 300.4 312 63.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 5.9e-79 298.5 297 65.0
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.9e-78 296.2 327 61.2
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.1e-77 294.3 344 59.3
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.6e-76 290.4 291 61.5
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.7e-76 289.7 339 58.7
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 3.6e-76 289.3 302 59.9
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.7e-73 280.4 311 61.7
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 9.1e-72 274.6 308 54.9
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 2.6e-71 273.1 309 56.3
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 4.5e-71 272.3 298 62.8
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 2.9e-70 269.6 309 60.5
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.5e-69 265.4 309 55.7
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 9.4e-69 264.6 314 58.0
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.1e-68 263.5 309 52.4
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 8.0e-68 261.5 309 61.2
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.0e-67 261.2 309 59.9
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.0e-67 261.2 298 59.1
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.4e-67 260.8 309 61.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.1e-66 257.7 311 58.2
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 4.4e-66 255.8 307 57.0
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 9.7e-66 254.6 318 57.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.7e-65 253.8 320 57.2
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.3e-65 251.9 191 66.5
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.1e-64 251.1 339 54.9
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.1e-64 249.2 306 57.5
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 7.0e-64 248.4 301 54.5
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.0e-62 244.6 309 57.6
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 2.7e-60 236.5 315 56.5
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 8.0e-60 235.0 308 52.9
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 4.0e-59 232.6 311 55.3
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 5.2e-59 232.3 311 46.6
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 5.2e-59 232.3 311 46.6
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 1.2e-58 231.1 310 54.5
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 5.7e-58 228.8 308 53.2
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 5.7e-58 228.8 308 53.2
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 9.8e-58 228.0 313 55.3
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.3e-57 227.6 309 54.0
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.2e-57 226.9 295 56.9
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.6e-55 220.7 311 47.3
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.6e-55 220.7 311 47.3
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 1.6e-55 220.7 311 47.3
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.0e-54 215.7 191 62.8
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.1e-53 214.5 275 46.2
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.2e-53 213.0 293 54.3
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.4e-51 207.6 311 48.6
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 8.8e-51 204.9 274 54.7
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 2.6e-50 203.4 313 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 3.3e-45 186.4 137 70.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.6e-45 185.7 119 73.9
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.3e-43 180.3 136 64.7
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.0e-38 164.9 160 55.6
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.3e-38 164.5 181 52.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.6e-36 156.4 228 46.5
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.6e-31 139.4 79 82.3
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.5e-26 124.4 168 57.7
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 7.5e-26 122.1 134 53.0
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.1e-24 118.2 66 84.8
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.2e-20 104.8 97 58.8
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 2.1e-20 104.0 134 61.9
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 2.8e-20 103.6 95 58.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 2.8e-20 103.6 95 58.9
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 6.4e-17 92.4 136 47.8
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.9e-14 83.2 48 79.2
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 2.5e-13 80.5 113 46.0
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 4.3e-13 79.7 54 72.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.0e-11 73.2 91 51.6
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.2e-08 63.2 61 50.8
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 1.6e-07 61.2 58 56.9
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.5e-07 60.1 96 50.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.0e-06 58.5 101 38.6
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.3e-06 58.2 29 86.2
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.0e-06 57.0 105 38.1
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 3.9e-06 56.6 48 50.0
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 6.6e-06 55.8 77 44.2
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 6.6e-06 55.8 88 36.4
SEGI_04448 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 6.6e-06 55.8 55 43.6
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 8.7e-06 55.5 53 49.1
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 8.7e-06 55.5 68 36.8
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 8.7e-06 55.5 68 36.8
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 8.7e-06 55.5 42 59.5


User provided reference genes

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