Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 2817.3 1367 100.0
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 2337.4 1394 82.9
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 2330.4 1404 82.3
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 2172.9 1402 76.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 2129.4 1404 74.9
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 2120.9 1403 76.7
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 2064.3 1394 73.5
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 2062.7 1395 74.3
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1988.4 1401 70.6
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1987.2 1401 70.5
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1950.6 1354 73.0
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1546.6 1470 56.1
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1545.0 1424 57.4
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1523.8 1462 55.5
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1519.2 1418 55.2
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1516.5 1421 56.4
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1511.9 1389 56.1
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1511.1 1424 55.3
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1509.6 1390 56.7
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1489.6 1414 55.4
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1476.1 1431 54.2
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1471.1 1417 54.3
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1467.6 1414 53.9
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1461.0 1412 55.0
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1458.0 1414 54.7
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1456.4 1434 54.8
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1445.6 1413 54.4
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1445.3 1416 54.4
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1431.8 1417 53.0
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1431.0 1422 53.2
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1429.8 1508 51.5
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1421.4 1420 53.5
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1419.1 1407 53.2
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1418.7 1434 52.1
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1409.0 1416 53.9
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1399.4 1379 54.1
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1395.6 1416 52.8
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1393.3 1421 52.7
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1388.6 1407 52.9
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1379.0 1400 52.9
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1367.8 1390 50.1
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1362.8 1478 49.6
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1355.1 1440 51.5
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1354.7 1423 51.1
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1349.3 1420 51.8
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1345.9 1395 50.4
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1345.1 1396 50.5
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1342.8 1399 50.7
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1339.7 1440 51.0
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1337.4 1396 50.4
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1336.6 1397 50.4
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1335.5 1382 50.6
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1330.9 1397 49.7
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1329.7 1381 50.5
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1328.5 1383 50.3
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1325.1 1383 50.6
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1323.9 1165 57.2
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1323.9 1423 50.7
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1315.8 1375 50.3
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1311.6 1383 50.5
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1307.0 1431 49.9
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1305.8 1379 52.1
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1302.3 1477 48.8
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1299.3 1524 48.6
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1299.3 1436 49.4
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1285.4 1144 56.6
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1280.8 1419 49.0
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1275.0 1164 55.2
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1272.3 1438 48.1
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1260.0 1414 48.6
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1243.8 1413 49.2
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1241.9 1367 49.3
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1231.5 1373 49.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1229.2 1354 50.1
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1225.3 1459 46.2
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1206.4 1410 48.9
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1173.7 1410 47.7
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1172.9 1418 46.0
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1135.2 1394 45.8
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1116.7 1104 52.8
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1113.6 1415 44.5
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1098.2 1061 53.9
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1091.6 999 56.1
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1086.6 1059 53.5
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1084.3 1000 55.2
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 2.7e-309 1065.8 1064 52.0
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.8e-287 992.3 947 53.6
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 7.7e-248 861.7 1404 39.2
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.2e-239 833.6 883 51.2
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.0e-228 796.2 1510 35.6
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 8.6e-223 778.5 1532 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 5.0e-215 752.7 1498 34.8
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.6e-213 746.5 760 51.6
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 1.1e-201 708.4 750 50.7
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 3.4e-195 686.8 823 46.5
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 1.3e-194 684.9 1353 36.0
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 3.6e-189 666.8 626 56.5
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.0e-179 634.4 600 55.8
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 4.9e-170 603.2 786 42.9
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 9.3e-169 599.0 793 44.0
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.6e-168 598.2 627 52.0
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.4e-153 548.5 1351 31.1
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.6e-152 545.0 658 47.0
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.6e-152 545.0 600 50.5
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.7e-150 536.6 888 39.1
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.2e-129 467.6 619 45.1
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 3.4e-102 377.9 386 52.8
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 2.5e-97 361.7 420 48.1
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 8.9e-95 353.2 200 84.5
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 3.3e-89 334.7 315 55.2
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-86 323.6 346 49.1
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 7.3e-73 280.4 267 53.6
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 1.1e-68 266.5 260 55.8
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 4.3e-65 254.6 276 51.4
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 4.0e-63 248.1 351 40.7
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 2.4e-60 238.8 373 41.8
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 7.1e-60 237.3 1625 22.5
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 5.6e-57 227.6 244 50.4
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 3.2e-52 211.8 1332 23.1
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.0e-50 206.8 319 40.4
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-48 198.7 283 43.5
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 1.1e-47 196.8 197 51.3
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 1.1e-47 196.8 227 46.3
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 5.3e-47 194.5 185 55.7
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.4e-44 186.4 187 51.3
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-42 179.1 449 27.4
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 3.2e-36 158.7 86 86.0
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 2.1e-35 156.0 190 45.3
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 6.7e-34 151.0 173 48.6
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 7.4e-33 147.5 94 73.4
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 7.4e-33 147.5 223 40.4
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.9e-30 137.9 153 45.1
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.1e-25 123.6 149 49.7
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 7.0e-23 114.4 76 71.1
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.1e-20 107.1 118 50.8
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-19 103.2 88 60.2
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 2.7e-19 102.4 115 46.1
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 3.0e-18 99.0 151 42.4
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 4.1e-15 88.6 84 51.2
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.2e-12 79.0 62 59.7
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.2e-12 79.0 62 59.7
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 4.2e-12 78.6 51 68.6
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.7e-11 75.1 62 58.1
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 4.7e-11 75.1 74 52.7
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 6.1e-11 74.7 63 57.1
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.0e-10 73.9 61 59.0
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.8e-10 73.2 55 63.6
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.5e-09 70.1 104 40.4
Psat0s3766g0160 Pisum sativum HOM05D002292 ORTHO05D012672 1.5e-09 70.1 36 88.9
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 3.4e-09 68.9 51 62.7
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 5.7e-09 68.2 131 37.4
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-08 67.0 52 65.4
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.7e-08 66.6 55 58.2
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-08 64.7 45 55.6
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 1.1e-07 63.9 195 28.7
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 2.0e-06 59.7 106 34.0
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 7.7e-06 57.8 159 23.3


User provided reference genes

Program Settings