Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 8.4e-285 983.0 500 100.0
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 8.5e-221 770.4 510 81.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 7.8e-206 720.7 501 76.6
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 3.4e-201 705.3 501 74.5
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.7e-200 703.0 502 75.3
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.4e-199 699.9 501 74.3
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.4e-199 699.1 504 74.6
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 4.1e-199 698.4 501 74.3
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 4.6e-198 694.9 510 74.5
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 2.6e-193 679.1 503 72.6
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 7.8e-190 667.5 502 72.3
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 3.4e-169 599.0 505 64.2
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.9e-167 593.2 503 62.4
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.2e-166 590.5 505 63.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 2.3e-165 586.3 503 61.8
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 3.9e-165 585.5 504 61.7
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 9.6e-164 580.9 505 61.4
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 4.8e-163 578.6 503 61.2
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 5.3e-162 575.1 504 61.7
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 6.9e-162 574.7 504 62.3
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.2e-161 573.9 503 61.8
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.0e-161 573.2 504 61.9
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.4e-161 572.4 503 60.6
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 2.9e-160 569.3 504 60.9
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 3.8e-160 568.9 504 61.5
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.8e-160 568.9 504 61.5
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.4e-159 566.2 506 61.1
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.4e-159 565.1 504 60.9
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 2.7e-158 562.8 493 61.7
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.5e-158 562.4 504 61.1
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.0e-158 561.6 504 60.9
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.3e-157 559.7 505 61.0
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.0e-157 559.3 504 60.7
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 3.3e-156 555.8 503 60.0
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 3.1e-154 549.3 503 59.4
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 2.0e-153 546.6 467 62.7
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 4.5e-153 545.4 505 59.6
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 7.6e-153 544.7 504 59.7
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 3.8e-152 542.3 504 59.7
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 6.0e-150 535.0 505 58.6
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 7.9e-150 534.6 505 58.4
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.0e-149 534.3 504 59.1
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 5.1e-149 531.9 504 57.9
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.1e-148 530.8 504 57.5
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 9.6e-148 527.7 539 57.5
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 6.2e-147 525.0 505 57.6
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.0e-146 522.3 504 57.5
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.2e-143 512.3 503 56.3
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.6e-142 510.4 528 55.3
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.6e-142 510.4 506 56.1
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 2.1e-142 510.0 506 56.1
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 2.7e-142 509.6 506 56.1
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.3e-141 507.3 504 56.5
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 2.3e-141 506.5 504 55.6
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.1e-140 504.2 490 56.5
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.3e-140 502.3 505 56.4
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 9.7e-140 501.1 512 54.9
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.6e-139 500.4 544 54.2
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 3.4e-137 492.7 511 55.0
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.7e-136 490.3 512 54.9
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 3.8e-136 489.2 505 55.0
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 5.0e-136 488.8 475 57.5
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 2.5e-132 476.5 528 53.8
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 7.4e-132 474.9 546 49.6
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 4.8e-131 472.2 506 54.3
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 4.1e-130 469.2 505 54.3
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 5.3e-130 468.8 524 53.1
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 5.9e-129 465.3 514 51.0
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 5.0e-128 462.2 516 51.4
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.2e-126 457.6 507 52.7
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.0e-125 454.5 515 52.0
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.6e-124 449.9 516 52.9
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 7.4e-124 448.4 579 49.6
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.3e-123 447.6 516 52.7
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.1e-122 444.5 579 49.4
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 2.4e-122 443.4 500 51.6
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.2e-121 441.0 513 52.2
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 4.5e-121 439.1 518 52.3
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 7.7e-121 438.3 524 51.1
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 1.3e-120 437.6 506 51.4
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 2.2e-120 436.8 516 51.7
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 8.5e-120 434.9 502 52.0
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.1e-119 434.5 518 51.2
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 5.5e-119 432.2 515 51.1
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 1.2e-118 431.0 564 48.6
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 6.7e-117 425.2 543 48.6
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 3.3e-116 422.9 389 60.4
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 7.4e-116 421.8 388 60.3
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 7.4e-116 421.8 530 49.8
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 6.3e-115 418.7 457 53.8
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.6e-113 414.1 389 59.9
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 4.5e-113 412.5 563 44.8
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 5.0e-112 409.1 513 46.8
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 6.5e-112 408.7 520 48.5
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.9e-111 407.1 514 48.4
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.5e-111 406.8 526 49.0
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 4.2e-111 406.0 524 48.3
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 2.1e-110 403.7 526 48.1
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 6.1e-110 402.1 510 48.4
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 6.8e-109 398.7 520 47.5
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.5e-108 397.5 455 48.8
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 1.4e-106 391.0 511 48.7
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 3.4e-100 369.8 523 45.7
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 7.5e-100 368.6 465 48.2
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.0e-96 358.2 340 58.5
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.5e-95 353.6 350 54.9
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 8.3e-91 338.6 281 65.8
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.6e-70 271.2 261 58.2
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.6e-65 254.6 394 40.4
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 2.1e-65 254.2 222 63.1
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 1.7e-64 251.1 271 53.1
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.0e-64 250.4 222 62.2
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.8e-61 241.1 221 61.1
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.7e-59 234.6 176 66.5
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.7e-59 234.6 463 35.9
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.3e-56 224.2 215 54.4
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.0e-48 197.2 517 33.3
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.6e-48 196.1 374 38.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.7e-41 174.1 443 34.5
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.0e-40 172.2 461 33.0
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.6e-33 148.3 127 63.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.9e-32 143.7 447 28.9
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.7e-32 142.9 106 70.8
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.1e-30 137.9 447 29.1
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 5.3e-29 133.3 451 28.8
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.9e-26 124.8 181 40.9
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 2.7e-25 120.9 148 44.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 5.3e-21 106.7 460 28.3
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 6.9e-21 106.3 137 45.3
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.6e-20 104.4 114 46.5
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.2e-14 84.7 86 58.1
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 4.2e-10 70.5 41 75.6
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.4e-08 65.5 95 45.3


User provided reference genes

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