Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.0e-128 463.4 235 100.0
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.7e-118 429.5 233 91.8
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.9e-118 427.9 235 90.2
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 6.4e-118 427.6 233 91.4
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.0e-115 420.2 232 90.5
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.2e-113 413.3 232 87.1
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.6e-111 405.6 229 87.3
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 4.4e-111 404.8 230 85.2
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.9e-110 402.1 233 85.4
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 7.1e-109 397.5 233 82.8
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.0e-107 392.1 235 81.3
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 3.9e-107 391.7 234 80.8
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 3.6e-105 385.2 230 80.9
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.7e-102 376.3 231 79.7
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.0e-99 365.5 228 78.5
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.5e-98 363.2 232 75.9
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.5e-98 362.5 228 77.6
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 3.3e-98 362.1 233 76.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 7.3e-98 360.9 233 73.4
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 9.6e-98 360.5 227 76.2
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.3e-97 360.1 233 76.0
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.6e-97 359.8 227 77.5
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.6e-97 358.6 228 77.6
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 8.1e-97 357.5 228 75.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 8.1e-97 357.5 233 73.4
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.4e-96 356.7 227 74.9
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.8e-96 356.3 228 75.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.4e-96 355.9 232 74.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.1e-96 355.5 228 75.0
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 5.3e-96 354.8 233 73.4
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.0e-95 352.8 227 74.0
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 4.4e-95 351.7 227 72.7
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 4.4e-95 351.7 227 74.0
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.4e-95 351.7 228 73.2
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 7.6e-95 350.9 227 74.4
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 9.9e-95 350.5 218 77.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.7e-94 349.7 231 74.0
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.2e-94 349.4 227 72.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.8e-94 348.6 233 72.1
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.9e-94 348.2 228 72.8
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 6.4e-94 347.8 227 73.1
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 6.4e-94 347.8 227 74.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 6.4e-94 347.8 225 75.1
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.4e-94 347.8 228 73.2
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 8.4e-94 347.4 227 73.6
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 8.4e-94 347.4 227 72.2
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.1e-93 347.1 228 73.7
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.9e-93 346.3 231 72.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.2e-93 345.5 231 71.4
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.4e-93 344.7 228 72.8
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 5.4e-93 344.7 227 71.8
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 5.4e-93 344.7 230 72.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 7.1e-93 344.4 233 70.4
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 7.1e-93 344.4 222 76.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 7.1e-93 344.4 228 72.4
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.2e-92 343.6 232 71.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.6e-92 343.2 227 72.7
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.6e-92 343.2 223 75.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.1e-92 342.8 232 70.7
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-92 342.8 233 71.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 6.0e-92 341.3 228 73.2
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.0e-92 341.3 228 72.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.3e-91 340.1 235 73.2
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.7e-91 339.7 233 71.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.7e-91 339.7 228 71.5
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.3e-91 339.3 232 71.6
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 5.1e-91 338.2 232 71.1
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 5.1e-91 338.2 233 69.5
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 8.7e-91 337.4 228 71.9
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-90 337.0 233 73.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.1e-90 337.0 228 71.1
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.1e-90 337.0 212 76.4
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.1e-90 337.0 227 71.4
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.9e-90 336.3 228 71.5
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-90 336.3 233 70.0
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 3.3e-90 335.5 271 64.9
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 4.3e-90 335.1 225 72.4
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 4.3e-90 335.1 227 72.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.1e-89 332.8 227 72.7
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.1e-89 332.8 224 71.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.1e-89 332.8 227 72.7
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 8.1e-89 330.9 235 71.1
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 8.1e-89 330.9 228 70.2
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.1e-88 330.5 225 72.0
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.1e-88 330.5 225 71.1
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.4e-88 330.1 225 71.1
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-88 329.7 225 71.1
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.8e-88 329.7 225 71.1
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.8e-88 329.7 218 73.9
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.1e-88 328.9 228 70.6
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 4.0e-88 328.6 231 69.7
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 5.3e-88 328.2 225 70.7
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 5.3e-88 328.2 227 70.5
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 6.9e-88 327.8 225 70.2
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 6.9e-88 327.8 228 70.2
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 9.0e-88 327.4 235 69.8
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.5e-87 326.6 225 70.7
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-87 325.9 225 70.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.5e-87 325.1 229 69.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.5e-87 325.1 229 69.9
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 5.8e-87 324.7 225 70.2
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 7.6e-87 324.3 225 71.6
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 7.6e-87 324.3 223 71.3
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.6e-87 324.3 223 70.9
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 9.9e-87 323.9 224 67.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.9e-86 322.4 231 68.4
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.9e-86 322.4 229 69.0
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.8e-86 322.0 235 69.4
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.4e-86 321.2 229 68.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-85 320.1 201 75.6
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.5e-85 318.2 224 68.3
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.3e-83 312.8 313 53.4
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 3.0e-83 312.4 228 64.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.1e-83 311.6 233 66.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.5e-82 309.3 224 66.5
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 4.8e-81 305.1 195 77.4
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 8.1e-81 304.3 204 73.5
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.1e-80 303.9 228 63.2
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 9.0e-80 300.8 225 66.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-79 300.4 235 62.6
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.0e-78 297.4 235 62.1
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.9e-78 295.8 227 65.6
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.5e-77 292.7 224 63.4
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.0e-75 287.3 208 65.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.8e-75 286.6 188 75.0
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.7e-73 278.9 204 67.6
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.7e-70 270.0 195 68.2
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.5e-69 265.0 235 60.4
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.7e-68 262.7 181 71.3
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-64 250.4 154 77.3
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.3e-62 243.8 212 57.1
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.3e-62 243.8 182 67.0
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.4e-61 240.4 223 55.2
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 3.0e-59 232.6 133 83.5
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 5.1e-59 231.9 211 58.3
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-58 230.7 144 76.4
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.3e-58 228.8 232 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 5.3e-56 221.9 212 52.4
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.5e-53 213.0 124 79.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.8e-48 196.8 171 60.8
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 2.4e-48 196.4 147 67.3
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.8e-46 189.1 142 69.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 5.0e-46 188.7 144 63.9
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.7e-44 183.0 139 64.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 3.0e-43 179.5 119 69.7
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 3.0e-43 179.5 133 66.9
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 5.2e-43 178.7 143 62.2
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 4.4e-42 175.6 134 65.7
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.6e-39 167.2 202 44.6
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 3.5e-39 166.0 134 61.2
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 5.5e-37 158.7 126 64.3
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.6e-36 157.1 124 68.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.1e-36 156.8 175 47.4
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.0e-35 152.9 97 77.3
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-34 150.6 106 68.9
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.5e-34 150.6 91 78.0
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.6e-34 149.8 191 44.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.7e-33 146.0 109 67.9
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 8.3e-33 144.8 85 81.2
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 4.1e-32 142.5 102 70.6
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 2.1e-28 130.2 85 74.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.7e-28 129.8 81 79.0
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.8e-27 127.1 77 81.8
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.3e-27 126.7 91 69.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.3e-27 126.7 85 69.4
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.2e-26 124.4 95 67.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 8.3e-25 118.2 76 73.7
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.6e-23 114.0 85 64.7
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 3.5e-23 112.8 79 67.1
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.9e-23 112.1 85 64.7
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 2.3e-22 110.2 99 58.6
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-21 106.3 125 48.8
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-18 97.8 63 71.4
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 6.4e-17 92.0 90 51.1
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.2e-15 87.8 61 67.2
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.7e-15 86.7 64 68.8
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 3.5e-15 86.3 63 68.3
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 5.9e-15 85.5 182 30.8
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 4.3e-13 79.3 186 34.4
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-11 73.6 60 58.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 5.2e-11 72.4 67 50.7
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 8.9e-11 71.6 49 69.4
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.4e-10 69.7 185 29.2


User provided reference genes

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