Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 2197.5 1121 100.0
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1813.5 1130 83.1
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1803.5 1136 82.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1800.0 1136 81.7
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1729.5 1144 78.8
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1719.9 1138 78.8
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1718.4 1141 78.5
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1684.5 1143 77.6
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1677.1 1143 77.0
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1676.4 1112 78.6
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1675.6 1136 78.0
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1616.3 1070 77.8
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1600.5 1144 72.4
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1594.7 1147 72.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1572.0 1129 74.1
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1533.9 1147 69.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1524.6 1085 72.1
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1523.8 1053 75.2
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1520.8 1010 76.4
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1517.7 1136 68.6
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1507.7 1151 68.2
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1505.7 1126 69.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1501.1 1147 67.4
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1500.3 1159 68.0
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1494.2 1099 69.6
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1490.7 1127 68.1
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1483.4 1147 68.5
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1483.0 1144 67.4
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1481.1 1111 68.7
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1478.4 1119 67.3
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1476.1 1140 68.7
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1471.8 1131 68.2
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1469.9 1120 67.3
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1466.4 1120 67.2
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1463.4 1130 67.4
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1462.6 1136 68.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1461.0 1002 74.8
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1458.4 1117 67.3
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1451.8 1141 66.3
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1419.8 1220 62.5
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1417.1 1104 66.5
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1417.1 1260 61.0
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1412.5 1131 66.0
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1407.9 1156 63.7
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1395.9 1111 65.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1388.6 1127 65.0
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1116 65.1
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1099 64.1
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1382.9 1178 62.6
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1382.5 1116 65.2
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1381.7 1175 62.8
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1380.9 1128 64.8
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1375.9 1110 65.0
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1371.7 1115 63.4
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1365.1 1016 66.2
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1361.7 1135 64.1
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1359.7 1110 65.5
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1357.8 1132 61.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1357.8 1155 61.2
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1352.4 1115 64.1
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1350.1 1098 62.8
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1347.4 1092 64.2
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1339.3 1101 63.9
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1337.8 1151 61.3
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1336.6 1117 63.4
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1334.7 1030 64.2
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1332.8 1113 63.0
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1330.5 1071 62.7
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1329.7 1122 62.2
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1328.9 1093 62.2
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1328.2 1044 63.2
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1325.1 1091 61.6
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1323.5 1091 61.5
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1315.8 1142 60.0
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1313.5 1092 62.9
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1313.1 1114 62.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1312.0 1067 62.2
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1312.0 1049 62.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1311.6 1061 62.9
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1310.4 1112 60.9
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1308.9 1058 63.6
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1305.0 1072 61.9
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1303.9 1108 61.7
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1301.2 1062 61.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1299.6 1062 61.9
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1298.9 1135 60.3
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1298.1 1105 61.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1297.0 1082 61.4
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1280.0 1122 60.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1273.1 1371 51.6
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1271.1 1123 59.6
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1250.0 1112 59.8
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1247.6 1073 60.5
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1247.3 908 69.8
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1234.9 1094 57.9
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1216.4 1089 58.0
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1209.9 973 61.6
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1199.1 1112 57.1
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1179.1 1097 56.2
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1165.6 1069 54.9
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1149.8 901 64.4
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1129.8 892 67.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1083.6 1058 54.9
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 1.2e-310 1070.1 817 67.7
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 7.6e-310 1067.4 1063 55.0
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.5e-302 1041.6 953 56.3
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.5e-297 1025.8 1115 51.2
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.2e-293 1012.7 676 74.4
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 4.2e-292 1008.4 1074 49.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.6e-275 953.4 1056 47.9
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.6e-267 925.6 963 49.0
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.0e-265 919.8 784 61.1
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 8.2e-256 887.9 663 70.1
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 3.2e-252 875.9 1003 46.5
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.8e-219 766.5 546 72.2
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.8e-219 766.5 546 72.2
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.2e-218 762.3 593 66.8
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 9.9e-209 731.5 1086 39.4
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.8e-157 561.2 353 80.5
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 2.8e-131 474.2 397 66.2
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.2e-57 229.6 584 28.3
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.6e-57 229.2 199 60.3
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 3.0e-56 224.9 201 57.2
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 3.8e-51 208.0 165 63.6
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.9e-50 205.7 146 66.4
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 5.3e-45 187.6 210 51.4
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 5.0e-43 181.0 172 55.8
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.6e-41 176.0 185 51.4
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.3e-38 164.1 174 52.9
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 3.2e-34 151.8 390 29.2
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 5.5e-34 151.0 618 22.7
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.8e-29 136.0 97 71.1
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 5.3e-29 134.4 154 53.2
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.1e-26 126.7 121 53.7
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 2.6e-23 115.5 302 33.1
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 5.5e-18 97.8 280 27.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.2e-14 85.9 107 43.0
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.1e-13 82.0 72 68.1
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 4.1e-13 81.6 68 63.2
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 3.5e-12 78.6 70 57.1
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.5e-10 72.4 85 52.9
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.2e-07 63.5 117 36.8
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 7.5e-07 60.8 50 44.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 1.7e-06 59.7 79 43.0
Solyc03g150123.1 Solanum lycopersicum HOM05D004682 ORTHO05D026176 2.2e-06 59.3 58 50.0


User provided reference genes

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