Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 5.4e-87 324.3 166 100.0
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 2.1e-51 206.1 164 66.5
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 1.6e-43 179.9 174 65.5
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 2.8e-43 179.1 169 65.7
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.5e-36 156.8 161 60.2
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 4.5e-33 145.2 153 58.2
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 1.3e-32 143.7 158 57.6
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 1.5e-28 130.2 120 66.7
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 9.0e-26 120.9 166 50.0
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.5e-25 120.2 169 50.3
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.4e-23 113.6 145 51.7
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.2e-23 112.5 166 48.2
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 3.2e-23 112.5 164 48.8
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 7.1e-23 111.3 166 48.2
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 4.6e-22 108.6 161 50.3
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.3e-21 107.1 154 53.9
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 2.3e-21 106.3 130 53.8
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 6.7e-21 104.8 183 45.4
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 6.7e-21 104.8 171 48.0
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 8.7e-21 104.4 152 52.6
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 5.7e-20 101.7 168 47.6
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 7.4e-20 101.3 156 51.3
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.3e-19 100.5 161 48.4
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.6e-19 100.1 157 47.8
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 2.2e-19 99.8 163 45.4
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.2e-19 99.8 136 57.4
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 6.3e-19 98.2 115 56.5
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 1.4e-18 97.1 164 48.8
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 3.1e-18 95.9 164 47.6
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 3.1e-18 95.9 130 51.5
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 4.1e-18 95.5 167 47.3
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 4.1e-18 95.5 166 47.0
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 5.3e-18 95.1 158 48.7
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 6.9e-18 94.7 162 43.2
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 9.0e-18 94.4 183 41.0
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 2.0e-17 93.2 143 46.2
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 2.0e-17 93.2 162 47.5
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 3.4e-17 92.4 159 47.2
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.4e-17 92.4 159 47.2
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 4.5e-17 92.0 160 41.9
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.5e-17 92.0 181 44.8
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 5.9e-17 91.7 132 50.0
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 5.9e-17 91.7 181 46.4
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 1.7e-16 90.1 181 44.2
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.7e-16 90.1 178 43.8
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.2e-16 89.7 178 43.8
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.8e-16 89.0 162 45.1
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 5.0e-16 88.6 123 48.8
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 6.5e-16 88.2 170 44.1
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 2.5e-15 86.3 150 45.3
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 2.5e-15 86.3 72 68.1
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.2e-15 85.9 162 42.6
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 4.2e-15 85.5 124 45.2
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 1.6e-14 83.6 158 44.9
Medtr4g085050 Medicago truncatula HOM05D006872 ORTHO05D006261 1.6e-14 83.6 73 67.1
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 1.6e-14 83.6 110 49.1
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 2.1e-14 83.2 89 52.8
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 2.1e-14 83.2 109 47.7
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 2.7e-14 82.8 134 47.0
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.7e-14 82.8 155 41.3
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 3.6e-14 82.4 113 47.8
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 3.6e-14 82.4 102 52.0
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 4.6e-14 82.0 110 50.0
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 7.9e-14 81.3 159 43.4
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 7.9e-14 81.3 134 48.5
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 1.0e-13 80.9 134 43.3
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 1.4e-13 80.5 79 59.5
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 1.4e-13 80.5 115 52.2
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 2.3e-13 79.7 123 45.5
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.3e-13 79.7 136 44.9
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 2.3e-13 79.7 127 45.7
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 3.9e-13 79.0 81 61.7
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 3.9e-13 79.0 133 45.1
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 6.7e-13 78.2 139 45.3
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 1.1e-12 77.4 130 46.9
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.1e-12 77.4 71 59.2
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 1.5e-12 77.0 125 43.2
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.5e-12 77.0 137 42.3
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 2.0e-12 76.6 131 42.0
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 2.5e-12 76.3 148 40.5
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 3.3e-12 75.9 108 47.2
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 3.3e-12 75.9 111 49.5
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 5.7e-12 75.1 125 42.4
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.7e-12 75.1 180 39.4
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 5.7e-12 75.1 162 38.9
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 9.7e-12 74.3 108 46.3
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 9.7e-12 74.3 125 42.4
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 9.7e-12 74.3 153 41.2
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.3e-11 73.9 83 53.0
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 1.3e-11 73.9 178 37.6
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.3e-11 73.9 135 42.2
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.3e-11 73.9 135 42.2
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 1.7e-11 73.6 125 41.6
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.7e-11 73.6 121 43.0
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 2.2e-11 73.2 153 40.5
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 2.2e-11 73.2 118 46.6
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 2.8e-11 72.8 119 45.4
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.7e-11 72.4 110 46.4
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 6.3e-11 71.6 118 47.5
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 6.3e-11 71.6 126 43.7
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 1.1e-10 70.9 122 43.4
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 1.4e-10 70.5 104 45.2
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 4.1e-10 68.9 76 57.9
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 5.3e-10 68.6 137 39.4
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 1.2e-09 67.4 57 64.9
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 1.5e-09 67.0 108 48.1
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 3.4e-09 65.9 151 36.4
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 4.5e-09 65.5 151 37.1
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 4.5e-09 65.5 153 35.9
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 5.9e-09 65.1 102 48.0
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 1.0e-08 64.3 137 42.3
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 2.2e-08 63.2 117 40.2
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 2.2e-08 63.2 117 40.2
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.2e-08 63.2 57 61.4
Prupe.6G139500 Prunus persica HOM05D021165 ORTHO05D006261 2.2e-08 63.2 98 40.8
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 3.8e-08 62.4 104 42.3
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 8.5e-08 61.2 70 57.1
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 2.5e-07 59.7 146 35.6
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 3.2e-07 59.3 131 37.4
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 3.2e-07 59.3 107 41.1
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 3.2e-07 59.3 69 53.6
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 7.2e-07 58.2 108 38.9
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 7.2e-07 58.2 108 38.9
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 9.4e-07 57.8 108 38.9
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 9.4e-07 57.8 68 48.5
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 1.2e-06 57.4 87 42.5
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 1.6e-06 57.0 53 56.6
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 2.1e-06 56.6 123 35.0
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 2.1e-06 56.6 57 59.6
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.1e-06 56.6 53 56.6
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 2.1e-06 56.6 94 40.4
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 2.7e-06 56.2 108 39.8
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.7e-06 56.2 78 47.4
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.7e-06 56.2 68 52.9
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 3.6e-06 55.8 88 43.2
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.7e-06 55.5 69 49.3
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 4.7e-06 55.5 64 53.1
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 4.7e-06 55.5 84 44.0
Aa31LG10G7560 Aethionema arabicum HOM05D006872 ORTHO05D006261 6.1e-06 55.1 103 39.8
RcHm_v2.0_Chr3g0488241 Rosa chinensis HOM05D006872 ORTHO05D006261 6.1e-06 55.1 56 55.4


User provided reference genes

Program Settings