Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.0e-294 1015.0 504 100.0
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.5e-273 944.9 504 91.5
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.7e-261 905.6 507 87.6
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.9e-260 902.1 507 86.8
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.4e-258 896.0 507 87.0
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 4.0e-258 894.4 507 86.8
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.8e-253 877.9 507 85.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 5.5e-252 874.0 507 85.2
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.5e-244 849.4 545 78.5
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 3.2e-244 848.2 545 78.5
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.6e-235 819.3 444 90.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.1e-231 806.6 458 87.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 8.9e-226 786.9 510 76.3
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.2e-225 786.6 509 76.4
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 3.4e-225 785.0 508 76.2
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.1e-223 780.0 509 76.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.9e-223 779.2 512 75.6
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.2e-223 778.5 507 76.5
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.2e-222 776.5 505 76.4
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.7e-222 775.4 507 76.5
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.7e-221 772.7 507 75.7
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.7e-221 772.7 508 76.2
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.1e-220 770.0 508 75.2
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 2.5e-220 768.8 506 76.9
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.5e-220 768.8 505 76.0
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.5e-220 768.8 509 74.3
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.6e-220 767.7 501 76.4
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.6e-219 766.1 504 75.4
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.8e-219 765.4 509 74.1
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 3.1e-218 761.9 514 73.3
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 4.0e-218 761.5 508 75.8
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.8e-218 760.8 510 75.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 3.4e-217 758.4 510 74.7
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.3e-216 756.5 508 74.2
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.3e-216 756.5 548 69.0
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-215 753.4 512 74.2
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 4.1e-215 751.5 512 73.4
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.5e-214 748.4 506 73.1
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 4.6e-214 748.0 506 73.1
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 6.0e-214 747.7 506 72.9
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 6.0e-214 747.7 513 73.3
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.0e-213 746.9 504 72.6
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.3e-213 746.5 506 73.5
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.3e-213 745.7 508 72.6
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 3.0e-213 745.3 503 73.4
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 3.9e-213 745.0 506 72.5
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 5.1e-213 744.6 506 73.3
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 8.6e-213 743.8 507 72.6
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 8.6e-213 743.8 514 71.8
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.5e-212 743.0 506 73.3
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.9e-212 742.7 514 72.6
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.3e-212 741.9 512 72.1
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.3e-212 741.9 512 72.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.3e-212 741.5 507 72.6
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.3e-212 741.5 508 72.2
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.3e-212 741.5 507 72.6
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.3e-212 741.5 492 75.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 7.3e-212 740.7 498 74.3
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 9.5e-212 740.3 510 73.3
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.6e-211 739.6 506 72.7
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.6e-211 739.6 505 71.9
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.1e-211 739.2 506 72.5
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.8e-211 738.8 514 70.8
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.6e-211 738.4 506 72.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 4.7e-211 738.0 506 73.3
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.1e-210 736.9 506 73.1
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.8e-210 736.1 505 71.7
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.3e-210 735.7 510 72.5
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.3e-210 735.7 504 72.8
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 3.1e-210 735.3 506 73.3
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 8.9e-210 733.8 510 72.0
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 8.9e-210 733.8 503 72.0
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 9.9e-209 730.3 474 76.8
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.7e-208 729.6 513 70.0
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-207 726.9 514 70.4
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.9e-207 726.1 476 76.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.1e-207 724.9 514 70.4
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 5.4e-207 724.5 475 75.8
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 9.2e-207 723.8 514 70.8
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.6e-206 723.0 514 71.0
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.7e-206 722.2 601 62.9
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.3e-205 719.9 501 71.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.3e-205 719.9 501 71.9
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.7e-205 719.5 506 70.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.3e-205 719.2 474 75.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.5e-204 715.7 512 70.9
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.3e-204 715.3 508 70.3
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 5.6e-204 714.5 486 72.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.6e-204 713.8 508 72.0
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.4e-202 709.9 510 69.8
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.8e-202 709.5 513 69.6
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.4e-202 709.1 514 68.9
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 2.4e-202 709.1 527 68.1
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.1e-202 708.8 508 71.7
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 6.4e-200 701.0 507 68.8
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.9e-199 699.5 514 69.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.2e-199 698.4 503 69.0
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 9.3e-199 697.2 452 77.2
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.7e-197 693.0 513 69.0
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 8.7e-197 690.6 502 68.9
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.6e-195 686.4 567 63.1
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-193 680.2 499 68.3
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.5e-193 678.3 508 69.7
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.9e-193 677.2 508 69.5
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.3e-192 676.8 510 67.6
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 6.4e-192 674.5 502 65.9
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.2e-190 670.2 582 60.8
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 6.7e-189 664.5 454 72.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.7e-189 664.1 533 66.6
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 5.6e-188 661.4 510 66.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 7.4e-188 661.0 513 65.7
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.3e-187 660.2 502 65.1
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.4e-186 656.8 512 65.8
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.3e-186 654.8 510 66.7
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.0e-185 652.9 510 66.3
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 5.8e-185 651.4 473 69.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.9e-184 648.3 504 63.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 4.9e-184 648.3 514 65.4
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 8.4e-184 647.5 528 64.0
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.7e-182 642.5 513 64.9
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.3e-180 635.6 528 63.3
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 4.8e-179 631.7 509 63.5
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.4e-170 603.6 336 89.3
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 5.3e-162 575.1 404 70.5
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.1e-159 567.4 399 70.2
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.7e-156 554.3 483 62.1
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.3e-155 553.9 532 53.6
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 5.0e-152 542.0 542 53.1
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.2e-145 520.8 664 47.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.8e-141 506.9 453 59.4
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 4.4e-140 502.3 417 61.2
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 9.5e-127 458.0 441 55.6
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.5e-116 421.8 270 78.1
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.6e-113 414.1 273 74.0
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 6.8e-109 398.7 280 72.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 5.1e-88 329.3 243 70.8
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 5.1e-88 329.3 239 66.5
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.8e-83 313.2 255 60.8
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.9e-83 312.8 209 71.8
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 9.9e-76 288.5 214 68.7
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.1e-73 280.8 497 39.2
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.9e-67 260.4 582 30.9
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 4.9e-59 233.0 395 36.5
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.6e-49 201.4 106 91.5
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 6.1e-49 199.5 138 70.3
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.7e-43 181.4 176 54.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.8e-35 153.7 230 40.0
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.0e-35 153.3 120 66.7
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 6.7e-32 142.9 114 62.3
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.5e-31 141.7 68 95.6
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.2e-27 127.9 242 38.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.5e-27 126.3 242 37.6
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.8e-22 110.9 63 84.1
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.0e-20 104.8 179 31.3
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 6.1e-17 93.2 73 61.6
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 5.7e-15 86.7 113 46.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.6e-12 78.6 61 65.6
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.6e-09 68.6 122 32.8
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 6.1e-09 66.6 211 25.6
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.2e-07 62.4 36 80.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 3.4e-07 60.8 83 43.4
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.2e-06 58.2 110 32.7


User provided reference genes

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