Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 3.7e-77 292.0 206 100.0
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.1e-57 227.3 204 85.8
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 5.5e-57 224.9 206 85.9
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.0e-55 220.7 205 80.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 5.2e-55 218.4 204 82.8
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 2.8e-53 212.6 206 83.0
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 5.3e-52 208.4 205 81.5
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.6e-51 206.8 205 80.0
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 3.5e-51 205.7 205 80.5
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 4.5e-51 205.3 205 79.5
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 7.7e-51 204.5 203 80.8
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 7.7e-51 204.5 203 80.8
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 3.3e-46 189.1 204 68.6
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 9.7e-46 187.6 204 70.1
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 9.7e-46 187.6 199 74.9
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 6.3e-45 184.9 202 77.2
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.8e-44 183.3 203 74.9
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 4.1e-44 182.2 204 72.1
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 4.1e-44 182.2 205 74.1
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 5.3e-44 181.8 231 65.8
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.2e-43 180.6 205 75.6
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.2e-43 180.6 203 67.5
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 2.0e-43 179.9 203 72.9
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.0e-43 179.9 207 72.0
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.0e-43 179.9 202 74.3
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.7e-43 179.5 204 76.5
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.7e-43 179.5 205 75.1
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 3.5e-43 179.1 204 67.2
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 5.9e-43 178.3 202 74.8
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 7.7e-43 177.9 203 75.9
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 7.7e-43 177.9 204 76.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 7.7e-43 177.9 204 76.0
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.7e-43 177.9 203 75.9
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.3e-42 177.2 202 70.3
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.2e-42 176.4 204 73.5
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.8e-42 175.6 204 71.1
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 3.8e-42 175.6 204 74.5
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 3.8e-42 175.6 202 69.8
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 5.0e-42 175.3 204 75.5
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 6.5e-42 174.9 204 66.2
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.5e-41 173.7 204 69.1
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.5e-41 173.7 206 72.8
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.5e-41 173.7 205 61.0
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.5e-41 172.9 208 73.1
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 4.2e-41 172.2 194 74.7
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 4.2e-41 172.2 203 72.4
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 9.4e-41 171.0 207 71.0
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 3.6e-40 169.1 207 70.5
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 4.0e-39 165.6 200 69.5
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 5.2e-39 165.2 205 68.8
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.2e-38 164.1 222 68.0
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 2.0e-38 163.3 180 77.8
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 2.0e-38 163.3 204 72.1
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.6e-38 162.9 195 73.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 3.4e-38 162.5 222 68.0
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 4.4e-38 162.2 203 72.4
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 5.7e-38 161.8 195 72.8
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.3e-37 160.6 195 69.2
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.3e-37 160.6 204 69.1
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 1.7e-37 160.2 206 70.4
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 3.7e-37 159.1 208 68.3
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 4.8e-37 158.7 199 70.9
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 7.0e-36 154.8 203 69.5
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 7.0e-36 154.8 203 69.5
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.6e-35 153.7 199 68.3
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 3.5e-35 152.5 183 74.9
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.5e-35 152.5 212 61.8
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.5e-35 152.5 212 61.8
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 7.7e-35 151.4 202 64.9
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.0e-34 151.0 201 63.2
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.7e-34 150.2 203 67.5
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.7e-34 150.2 195 70.3
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.3e-34 149.8 200 68.0
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 3.8e-34 149.1 203 55.7
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.0e-34 148.7 204 68.1
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 5.0e-34 148.7 204 64.2
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 8.6e-34 147.9 200 66.0
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.5e-33 147.1 203 68.0
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.9e-33 146.7 201 60.7
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.9e-33 146.7 208 59.6
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.2e-32 144.1 209 54.1
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.6e-32 143.7 200 60.0
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.1e-32 143.3 209 63.6
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 3.6e-32 142.5 201 43.3
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.6e-32 142.5 203 65.0
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 6.1e-32 141.7 140 70.7
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.0e-31 141.0 201 42.8
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 1.0e-31 141.0 202 63.9
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.0e-31 141.0 202 65.3
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-31 140.2 200 62.0
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.3e-31 139.8 202 61.4
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 3.0e-31 139.4 200 65.0
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 4.0e-31 139.0 209 62.7
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 4.0e-31 139.0 201 59.7
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 5.2e-31 138.7 201 41.8
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 5.2e-31 138.7 201 41.8
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.2e-31 138.7 203 64.0
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.2e-30 137.5 199 48.7
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 4.4e-30 135.6 200 59.5
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.4e-30 135.6 204 62.7
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 7.5e-30 134.8 199 58.8
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.8e-30 134.4 204 61.8
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.7e-29 133.7 205 63.4
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.8e-29 132.9 187 41.7
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 4.9e-29 132.1 259 44.0
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 8.3e-29 131.3 184 52.7
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.1e-28 131.0 199 49.7
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 9.2e-28 127.9 205 63.4
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 9.2e-28 127.9 104 65.4
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 1.6e-27 127.1 200 62.0
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.3e-25 118.2 207 50.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.8e-24 116.3 204 60.3
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.8e-23 113.6 201 48.8
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 8.9e-23 111.3 203 48.8
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 1.5e-22 110.5 146 76.7
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.6e-19 100.5 202 33.2
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 6.0e-19 98.6 193 45.1
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 8.6e-18 94.7 157 59.2
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 8.6e-18 94.7 157 59.2
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 8.6e-18 94.7 157 59.2
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 8.6e-18 94.7 157 59.2
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 2.5e-17 93.2 161 60.2
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 2.5e-17 93.2 161 60.2
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 5.6e-17 92.0 183 45.4
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 9.5e-17 91.3 202 34.7
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 9.5e-17 91.3 202 34.7
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 9.5e-17 91.3 167 37.7
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.2e-16 90.9 199 53.3
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 2.1e-16 90.1 202 34.7
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 2.8e-16 89.7 139 67.6
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.7e-16 89.0 149 68.5
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.7e-16 89.0 150 67.3
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.1e-15 87.8 108 48.1
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.4e-15 87.4 78 87.2
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-15 86.7 202 34.2
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 6.8e-15 85.1 138 48.6
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.2e-14 84.3 81 54.3
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 2.0e-14 83.6 185 52.4
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.5e-14 81.6 141 46.1
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.9e-13 79.0 150 50.7
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.9e-12 77.0 106 46.2
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 3.0e-10 69.7 81 45.7
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 2.5e-09 66.6 59 59.3
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 2.5e-09 66.6 114 59.6
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 2.0e-06 57.0 58 46.6
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 4.4e-06 55.8 79 40.5


User provided reference genes

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