Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08866_v3 Cicer arietinum L. HOM05D002464 ORTHO05D002530 1.6e-65 252.7 130 100.0
Medtr0160s0040 Medicago truncatula HOM05D002464 ORTHO05D002530 2.3e-48 195.7 168 63.1
TPR.G39100 Trifolium pratense HOM05D002464 ORTHO05D002530 6.1e-46 187.6 167 62.3
Lj1g0027370 Lotus japonicus HOM05D002464 ORTHO05D002530 1.5e-44 183.0 168 59.5
Phvul.008G144000 Phaseolus vulgaris HOM05D002464 ORTHO05D002530 9.8e-44 180.3 169 59.8
VMungo1383G0877 Vigna mungo HOM05D002464 ORTHO05D002530 9.8e-44 180.3 169 59.2
Glyma.01G077100 Glycine max HOM05D002464 ORTHO05D002530 9.2e-42 173.7 169 58.6
Lalb_Chr19g0127441 Lupinus albus HOM05D002464 ORTHO05D002530 6.8e-37 157.5 165 53.3
Potri.010G208300 Populus trichocarpa HOM05D002464 ORTHO05D002530 1.9e-31 139.4 168 46.4
Cfa020329 Carpinus fangiana HOM05D000316 ORTHO05D000374 4.3e-31 138.3 167 46.7
Sabra10G0161000 Salix brachista HOM05D002464 ORTHO05D002530 4.3e-31 138.3 174 46.0
QL07p008221 Quercus lobata HOM05D002464 ORTHO05D002530 7.3e-31 137.5 168 45.8
CiPaw.12G130700 Carya illinoinensis HOM05D002464 ORTHO05D002530 2.8e-30 135.6 167 46.1
Cpa.g.sc12.294 Carica papaya HOM05D002464 ORTHO05D002530 1.1e-29 133.7 167 44.9
Ciclev10009601m.g Citrus clementina HOM05D002464 ORTHO05D002530 6.8e-29 131.0 168 43.5
MD03G1199400 Malus domestica HOM05D002464 ORTHO05D002530 6.8e-29 131.0 167 45.5
FvH4_3g22910 Fragaria vesca HOM05D002464 ORTHO05D002530 1.2e-28 130.2 165 44.8
COL.COLO4_09668 Corchorus olitorius HOM05D002464 ORTHO05D002530 1.5e-28 129.8 167 44.3
TWI38G1248 Tripterygium wilfordii HOM05D002464 ORTHO05D002530 2.0e-28 129.4 164 47.0
Gohir.D05G372100 Gossypium hirsutum HOM05D002464 ORTHO05D002530 2.6e-28 129.0 164 43.9
Lj8A170T79 Lonicera japonica HOM05D002464 ORTHO05D002530 4.4e-28 128.3 167 44.3
FAN16G1564 Fragaria x ananassa HOM05D002464 ORTHO05D002530 5.8e-28 127.9 165 43.6
FAN21G3514 Fragaria x ananassa HOM05D002464 ORTHO05D002530 5.8e-28 127.9 165 43.6
Gorai.009G440300 Gossypium raimondii HOM05D002464 ORTHO05D002530 5.8e-28 127.9 164 43.3
Atru.chr2.3449 Acer truncatum HOM05D002464 ORTHO05D002530 1.3e-27 126.7 168 43.5
Eucgr.F00751 Eucalyptus grandis HOM05D002464 ORTHO05D002530 1.7e-27 126.3 167 42.5
Actinidia05091 Actinidia chinensis HOM05D002464 ORTHO05D002530 2.9e-27 125.6 157 45.2
GSVIVG01037665001 Vitis vinifera HOM05D002464 ORTHO05D002530 2.9e-27 125.6 167 44.3
Sed0013637 Sechium edule HOM05D002464 ORTHO05D002530 4.9e-27 124.8 158 46.2
Manes.03G130600 Manihot esculenta HOM05D002464 ORTHO05D002530 1.9e-26 122.9 158 43.7
RcHm_v2.0_Chr5g0040241 Rosa chinensis HOM05D002464 ORTHO05D002530 1.9e-26 122.9 165 42.4
Haze_09695 Corylus avellana HOM05D000698 ORTHO05D002530 2.4e-26 122.5 163 44.2
Prupe.4G215200 Prunus persica HOM05D002464 ORTHO05D002530 3.2e-26 122.1 167 42.5
CsaV3_3G005020 Cucumis sativus L. HOM05D002464 ORTHO05D002530 4.1e-26 121.7 163 44.8
MELO3C025364.2 Cucumis melo HOM05D002464 ORTHO05D002530 7.1e-26 120.9 162 45.1
PSO541G0772 Papaver somniferum HOM05D002464 ORTHO05D002530 7.1e-26 120.9 167 40.7
PGR083G1862 Punica granatum HOM05D002464 ORTHO05D002530 7.1e-26 120.9 167 40.1
Dinv40764 Davidia involucrata HOM05D000316 ORTHO05D000374 2.1e-25 119.4 167 41.3
Migut.H01821 Erythranthe guttata HOM05D002464 ORTHO05D002530 1.0e-24 117.1 163 42.9
Rhsim06G0218300 Rhododendron simsii HOM05D002464 ORTHO05D002530 1.0e-24 117.1 157 43.9
EL10Ac4g07795 Beta vulgaris HOM05D002464 ORTHO05D002530 1.3e-24 116.7 163 42.3
Oeu034033.1 Olea europaea HOM05D002464 ORTHO05D002530 1.3e-24 116.7 163 42.3
TAR629G0846 Trochodendron aralioides HOM05D002464 ORTHO05D002530 1.3e-24 116.7 168 41.7
ClCG10G005310 Citrullus lanatus HOM05D002464 ORTHO05D002530 1.7e-24 116.3 163 45.4
PSO675G7145 Papaver somniferum HOM05D002464 ORTHO05D002530 3.0e-24 115.5 167 40.7
Psat3g159280 Pisum sativum HOM05D002464 ORTHO05D002530 3.0e-24 115.5 122 55.7
Cc05_g13900 Coffea canephora HOM05D002464 ORTHO05D002530 3.9e-24 115.2 167 40.7
CiPaw.11G190900 Carya illinoinensis HOM05D002464 ORTHO05D002530 8.6e-24 114.0 147 44.2
Solyc12g005070.2 Solanum lycopersicum HOM05D002464 ORTHO05D002530 8.6e-24 114.0 166 39.8
CANSAT11G1809 Cannabis sativa HOM05D002464 ORTHO05D002530 1.1e-23 113.6 166 39.8
Sopen12g001070 Solanum pennellii HOM05D002464 ORTHO05D002530 1.1e-23 113.6 166 39.8
Thhalv10014758m.g Eutrema salsugineum HOM05D002464 ORTHO05D002530 1.5e-23 113.2 162 42.0
THA.LOC104811612 Tarenaya hassleriana HOM05D002464 ORTHO05D002530 1.9e-23 112.8 161 41.0
PGSC0003DMG400027868 Solanum tuberosum HOM05D002464 ORTHO05D002530 2.5e-23 112.5 166 41.6
Thecc.07G034500 Theobroma cacao HOM05D002464 ORTHO05D002530 2.5e-23 112.5 168 42.3
vmacro02229 Vaccinium macrocarpon HOM05D002464 ORTHO05D002530 5.6e-23 111.3 157 42.7
Duzib213G0169 Durio zibethinus HOM05D000316 ORTHO05D002530 7.3e-23 110.9 168 39.9
Sp6g16930 Schrenkiella parvula HOM05D002464 ORTHO05D002530 2.1e-22 109.4 157 42.0
Nitab4.5_0000168g0140 Nicotiana tabacum HOM05D002464 ORTHO05D002530 4.7e-22 108.2 159 40.9
Aqoxy1G02113 Aquilegia oxysepala HOM05D002464 ORTHO05D002530 6.2e-22 107.8 167 37.1
Nitab4.5_0012771g0010 Nicotiana tabacum HOM05D002464 ORTHO05D002530 6.2e-22 107.8 167 38.9
Peaxi162Scf00660g00038 Petunia axillaris HOM05D002464 ORTHO05D002530 6.2e-22 107.8 159 40.9
A10p12300 Brassica napus HOM05D002464 ORTHO05D002530 8.1e-22 107.5 157 41.4
BraA10t43324Z Brassica rapa HOM05D002464 ORTHO05D002530 8.1e-22 107.5 157 41.4
BcaC01g06333 Brassica carinata HOM05D002464 ORTHO05D002530 1.1e-21 107.1 156 41.0
BolC3t14093H Brassica oleracea HOM05D002464 ORTHO05D002530 1.1e-21 107.1 157 40.8
BcaB01g04339 Brassica carinata HOM05D002464 ORTHO05D002530 1.4e-21 106.7 157 40.8
BcaC01g06334 Brassica carinata HOM05D002464 ORTHO05D002530 1.4e-21 106.7 157 40.8
A03p14350 Brassica napus HOM05D002464 ORTHO05D002530 1.4e-21 106.7 157 40.1
BraA03t10732Z Brassica rapa HOM05D002464 ORTHO05D002530 1.4e-21 106.7 157 40.1
CSS0043656 Camellia sinensis var. sinensis HOM05D002464 ORTHO05D002530 1.8e-21 106.3 121 47.1
Gohir.A04G014200 Gossypium hirsutum HOM05D002464 ORTHO05D002530 1.8e-21 106.3 106 52.8
Lsat_1_v5_gn_2_30500 Lactuca sativa HOM05D002464 ORTHO05D002530 1.8e-21 106.3 155 40.6
Lsat_1_v5_gn_5_3861 Lactuca sativa HOM05D002464 ORTHO05D002530 1.8e-21 106.3 167 38.3
BcaB08g35863 Brassica carinata HOM05D002464 ORTHO05D002530 2.4e-21 105.9 157 40.8
BcaC04g20280 Brassica carinata HOM05D002464 ORTHO05D002530 2.4e-21 105.9 157 40.8
C09p45550 Brassica napus HOM05D002464 ORTHO05D002530 2.4e-21 105.9 157 40.8
BolC9t57427H Brassica oleracea HOM05D002464 ORTHO05D002530 2.4e-21 105.9 157 40.8
DCAR_022569 Daucus carota HOM05D002464 ORTHO05D002530 5.2e-21 104.8 166 37.3
C03p16730 Brassica napus HOM05D002464 ORTHO05D002530 6.8e-21 104.4 157 39.5
AT5G54980 Arabidopsis thaliana HOM05D002464 ORTHO05D002530 8.9e-21 104.0 157 40.1
HanXRQChr05g0159531 Helianthus annuus HOM05D002464 ORTHO05D002530 2.6e-20 102.4 157 36.3
MSTRG.6927 Avicennia marina HOM05D002464 ORTHO05D002530 3.4e-20 102.1 167 38.9
Carub.0008s1527 Capsella rubella HOM05D002464 ORTHO05D002530 4.4e-20 101.7 157 40.1
AL8G30450 Arabidopsis lyrata HOM05D002464 ORTHO05D002530 9.9e-20 100.5 157 39.5
CARHR268320 Cardamine hirsuta HOM05D002464 ORTHO05D002530 1.3e-19 100.1 157 39.5
ECA246G0720 Erigeron canadensis HOM05D002464 ORTHO05D002530 1.3e-19 100.1 162 35.2
Hund01986 Selenicereus undatus HOM05D002464 ORTHO05D002530 1.7e-19 99.8 161 40.4
SGA_v2.0_scaffold18G08545 Striga asiatica HOM05D000698 ORTHO05D002530 3.8e-19 98.6 121 44.6
ATR0794G005 Amborella trichopoda HOM05D002464 ORTHO05D002530 6.4e-19 97.8 158 36.7
Sc16g0005950 Simmondsia chinensis HOM05D002464 ORTHO05D002530 6.4e-19 97.8 157 39.5
Migut.M01749 Erythranthe guttata HOM05D002464 ORTHO05D002530 1.1e-18 97.1 157 37.6
MBI02_g28410_MAGBIO Magnolia biondii HOM05D002464 ORTHO05D002530 7.1e-18 94.4 162 33.3
MD11G1216300 Malus domestica HOM05D002464 ORTHO05D002530 6.0e-17 91.3 260 28.8
MBI02_g05874_MAGBIO Magnolia biondii HOM05D002464 ORTHO05D002530 1.0e-16 90.5 121 38.8
Aa31LG3G10890 Aethionema arabicum HOM05D002464 ORTHO05D002530 3.0e-16 89.0 158 35.4
Os02g0219900 Oryza sativa ssp. japonica HOM05D002464 ORTHO05D002530 9.6e-15 84.0 157 31.8
CDE11G0801 Ceratophyllum demersum HOM05D002464 ORTHO05D002530 1.6e-14 83.2 162 33.3
Zm00001eb240120 Zea mays HOM05D002464 ORTHO05D002530 4.4e-12 75.1 123 37.4
Lsat_1_v5_gn_5_171181 Lactuca sativa HOM05D002464 ORTHO05D002530 7.6e-12 74.3 65 53.8
Os04g0281900 Oryza sativa ssp. japonica HOM05D002464 ORTHO05D002530 2.2e-11 72.8 155 31.6
HPP92_013038 Vanilla planifolia HOM05D002464 ORTHO05D002530 2.2e-11 72.8 119 36.1
Zm00001eb087050 Zea mays HOM05D002464 ORTHO05D002530 2.2e-11 72.8 115 38.3
Zm00001eb420360 Zea mays HOM05D002464 ORTHO05D002530 1.1e-10 70.5 113 37.2
FAN25G0141 Fragaria x ananassa HOM05D002464 ORTHO05D002530 1.4e-10 70.1 122 36.9
Lsat_1_v5_gn_4_50060 Lactuca sativa HOM05D002464 ORTHO05D002530 1.4e-10 70.1 66 50.0
HPP92_017593 Vanilla planifolia HOM05D002464 ORTHO05D002530 3.2e-10 68.9 160 29.4
FAN25G2011 Fragaria x ananassa HOM05D000698 ORTHO05D000839 5.4e-10 68.2 121 36.4
EL10Ac4g08532 Beta vulgaris HOM05D002464 ORTHO05D002530 3.5e-09 65.5 163 26.4
Carub.0001s1695 Capsella rubella HOM05D002464 ORTHO05D002530 4.6e-09 65.1 162 25.9
C08p17750 Brassica napus HOM05D002464 ORTHO05D002530 6.0e-09 64.7 162 27.2
BolC8t49401H Brassica oleracea HOM05D002464 ORTHO05D002530 6.0e-09 64.7 162 27.2
A08p31060 Brassica napus HOM05D002464 ORTHO05D002530 1.0e-08 63.9 162 26.5
BraA08t35034Z Brassica rapa HOM05D002464 ORTHO05D002530 1.0e-08 63.9 162 26.5
BcaB03g13013 Brassica carinata HOM05D002464 ORTHO05D002530 1.3e-08 63.5 162 27.2
CDE04G2121 Ceratophyllum demersum HOM05D002464 ORTHO05D002530 1.3e-08 63.5 164 26.8
Rhsim06G0183200 Rhododendron simsii HOM05D002464 ORTHO05D002530 1.7e-08 63.2 166 25.3
Hund02297 Selenicereus undatus HOM05D002464 ORTHO05D002530 1.7e-08 63.2 166 27.1
Nn2g11844 Nelumbo nucifera HOM05D002464 ORTHO05D002530 2.3e-08 62.8 120 29.2
C08p43990 Brassica napus HOM05D002464 ORTHO05D002530 5.1e-08 61.6 157 27.4
BolC8t51948H Brassica oleracea HOM05D002464 ORTHO05D002530 5.1e-08 61.6 157 27.4
AL1G29440 Arabidopsis lyrata HOM05D002464 ORTHO05D002530 6.6e-08 61.2 166 24.1
BcaC07g41408 Brassica carinata HOM05D002464 ORTHO05D002530 6.6e-08 61.2 162 26.5
BcaC07g41432 Brassica carinata HOM05D002464 ORTHO05D002530 6.6e-08 61.2 157 27.4
AUR62015787 Chenopodium quinoa HOM05D002464 ORTHO05D002530 6.6e-08 61.2 116 36.2
unitig_62.g23286 Utricularia gibba HOM05D000698 ORTHO05D000839 6.6e-08 61.2 111 33.3
BcaC07g38834 Brassica carinata HOM05D002464 ORTHO05D002530 8.7e-08 60.8 162 26.5
CDE06G1188 Ceratophyllum demersum HOM05D002464 ORTHO05D002530 8.7e-08 60.8 159 25.2
CARHR017780 Cardamine hirsuta HOM05D002464 ORTHO05D002530 1.1e-07 60.5 166 24.7
Sp1g15340 Schrenkiella parvula HOM05D002464 ORTHO05D002530 1.5e-07 60.1 162 25.3
AT1G17200 Arabidopsis thaliana HOM05D002464 ORTHO05D002530 1.9e-07 59.7 162 24.1
AUR62039186 Chenopodium quinoa HOM05D002464 ORTHO05D002530 1.9e-07 59.7 163 25.8
Oeu012704.1 Olea europaea HOM05D002464 ORTHO05D002530 1.9e-07 59.7 168 24.4
A09p60500 Brassica napus HOM05D002464 ORTHO05D002530 2.5e-07 59.3 162 25.3
BraA09t41421Z Brassica rapa HOM05D002464 ORTHO05D002530 2.5e-07 59.3 162 25.3
Thhalv10008792m.g Eutrema salsugineum HOM05D002464 ORTHO05D002530 2.5e-07 59.3 163 24.5
Dinv21342 Davidia involucrata HOM05D002464 ORTHO05D002530 3.3e-07 58.9 163 29.4
BcaB07g34042 Brassica carinata HOM05D002464 ORTHO05D002530 4.3e-07 58.5 162 25.3
A06p13120 Brassica napus HOM05D002464 ORTHO05D002530 7.3e-07 57.8 161 25.5
BraA06t24470Z Brassica rapa HOM05D002464 ORTHO05D002530 7.3e-07 57.8 161 25.5
THA.LOC104813973 Tarenaya hassleriana HOM05D002464 ORTHO05D002530 7.3e-07 57.8 164 24.4
Lj8C140T3 Lonicera japonica HOM05D002464 ORTHO05D002530 9.6e-07 57.4 123 28.5
unitig_746.g26691 Utricularia gibba HOM05D002464 ORTHO05D002530 9.6e-07 57.4 110 29.1
DCAR_019647 Daucus carota HOM05D002464 ORTHO05D002530 1.3e-06 57.0 119 30.3
Actinidia12336 Actinidia chinensis HOM05D002464 ORTHO05D002530 1.6e-06 56.6 159 26.4
BcaC05g25657 Brassica carinata HOM05D002464 ORTHO05D002530 1.6e-06 56.6 161 24.8
C05p15620 Brassica napus HOM05D002464 ORTHO05D002530 1.6e-06 56.6 161 24.8
BolC5t30269H Brassica oleracea HOM05D002464 ORTHO05D002530 1.6e-06 56.6 161 24.8
Glyma.14G208900 Glycine max HOM05D002464 ORTHO05D002530 1.6e-06 56.6 169 24.3
Ah.04g165960 Amaranthus hybridus HOM05D000316 ORTHO05D000374 2.1e-06 56.2 113 32.7
MSTRG.14263 Avicennia marina HOM05D002464 ORTHO05D002530 2.1e-06 56.2 159 26.4
DCAR_017558 Daucus carota HOM05D002464 ORTHO05D002530 2.1e-06 56.2 164 26.2
Lalb_Chr15g0085341 Lupinus albus HOM05D002464 ORTHO05D002530 2.1e-06 56.2 164 25.0
MBI13_g05968_MAGBIO Magnolia biondii HOM05D002464 ORTHO05D002530 2.1e-06 56.2 123 29.3
CsaV3_4G007660 Cucumis sativus L. HOM05D002464 ORTHO05D002530 2.8e-06 55.8 123 27.6
LjContig00141g0008303 Lotus japonicus HOM05D002464 ORTHO05D002530 2.8e-06 55.8 124 29.0
Nn002s41371 Nelumbo nucifera HOM05D002464 ORTHO05D002530 2.8e-06 55.8 84 38.1
Sc03g0007850 Simmondsia chinensis HOM05D002464 ORTHO05D002530 2.8e-06 55.8 123 29.3
Aa31LG4G2600 Aethionema arabicum HOM05D002464 ORTHO05D002530 3.6e-06 55.5 120 27.5
CARHR089400 Cardamine hirsuta HOM05D002464 ORTHO05D002530 3.6e-06 55.5 123 29.3
AUR62019445 Chenopodium quinoa HOM05D002464 ORTHO05D002530 3.6e-06 55.5 163 24.5
Phvul.008G242000 Phaseolus vulgaris HOM05D002464 ORTHO05D002530 3.6e-06 55.5 124 26.6
SalBow7G1952 Salvia bowleyana HOM05D002464 ORTHO05D002530 3.6e-06 55.5 123 28.5
SalBow7G3076 Salvia bowleyana HOM05D002464 ORTHO05D002530 3.6e-06 55.5 123 28.5
Aa31LG8G1640 Aethionema arabicum HOM05D002464 ORTHO05D002530 4.8e-06 55.1 120 29.2
ATR0006G070 Amborella trichopoda HOM05D002464 ORTHO05D002530 4.8e-06 55.1 162 22.8
MSTRG.14436 Avicennia marina HOM05D002464 ORTHO05D002530 4.8e-06 55.1 71 39.4
Sopen07g029390 Solanum pennellii HOM05D002464 ORTHO05D002530 4.8e-06 55.1 163 24.5
VMungo0647G1093 Vigna mungo HOM05D002464 ORTHO05D002530 4.8e-06 55.1 124 26.6
Thhalv10021621m.g Eutrema salsugineum HOM05D002464 ORTHO05D002530 6.2e-06 54.7 120 28.3
Peaxi162Scf00111g00526 Petunia axillaris HOM05D002464 ORTHO05D002530 6.2e-06 54.7 119 32.8
Solyc10g007660.3 Solanum lycopersicum HOM05D002464 ORTHO05D002530 6.2e-06 54.7 116 30.2
Cfa007735 Carpinus fangiana HOM05D002464 ORTHO05D002530 8.1e-06 54.3 162 24.1


User provided reference genes

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