Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.6e-145 519.6 299 100.0
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 4.3e-87 325.5 290 67.6
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 9.7e-79 297.7 293 64.8
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 3.2e-58 229.6 298 49.7
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.6e-57 226.1 300 51.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.8e-53 213.8 290 47.9
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 6.1e-49 198.7 286 46.9
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 8.0e-49 198.4 285 45.3
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.7e-46 190.7 326 44.8
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.8e-46 189.9 318 45.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 3.1e-45 186.4 325 48.3
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.6e-44 184.1 326 42.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.0e-43 181.4 305 44.6
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.3e-43 181.0 336 44.0
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 3.9e-43 179.5 312 43.9
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 5.0e-43 179.1 319 49.2
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.1e-42 177.9 317 49.8
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 3.3e-42 176.4 331 43.5
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 3.3e-42 176.4 310 43.5
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.6e-41 174.1 313 43.8
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.6e-41 174.1 310 41.3
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.6e-41 172.9 303 46.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 3.6e-41 172.9 332 41.3
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 3.6e-41 172.9 309 44.0
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 8.0e-41 171.8 294 43.5
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-40 171.4 319 42.3
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.3e-40 170.2 301 42.9
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 3.1e-40 169.9 270 50.0
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 8.9e-40 168.3 310 44.2
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 7.5e-39 165.2 316 42.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.5e-39 165.2 309 46.3
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 7.5e-39 165.2 288 46.5
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.5e-39 165.2 326 41.7
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 9.8e-39 164.9 333 45.0
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.3e-38 164.5 317 40.4
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.3e-38 164.5 322 46.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-38 164.5 321 47.4
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-38 164.5 322 46.6
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 2.2e-38 163.7 328 44.8
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.2e-38 163.7 322 46.3
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.7e-38 162.9 303 42.9
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 4.9e-38 162.5 302 43.4
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 6.4e-38 162.2 301 44.2
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 8.3e-38 161.8 302 43.4
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 8.3e-38 161.8 317 40.4
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.1e-37 161.4 309 45.6
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.4e-37 161.0 323 44.0
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.9e-37 160.6 314 43.3
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 5.4e-37 159.1 317 40.4
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 9.2e-37 158.3 328 43.9
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 9.2e-37 158.3 319 40.4
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.0e-36 157.1 288 42.0
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.7e-35 154.1 321 39.3
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.3e-35 153.7 329 40.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 5.0e-35 152.5 305 39.3
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 8.6e-35 151.8 321 39.6
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.1e-34 151.4 345 38.0
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.5e-34 151.0 314 41.4
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.3e-34 149.8 327 44.6
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 7.3e-34 148.7 304 41.1
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.6e-33 147.5 298 40.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.2e-33 145.6 313 38.3
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 8.0e-33 145.2 286 41.6
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 3.1e-32 143.3 296 42.6
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.5e-31 141.0 319 37.3
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 2.0e-31 140.6 305 39.7
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-31 139.0 217 45.2
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-31 139.0 217 45.2
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-31 139.0 219 44.7
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-31 139.0 219 44.7
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 9.8e-31 138.3 221 46.2
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 9.8e-31 138.3 221 46.2
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-30 137.1 221 45.7
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.9e-30 136.7 308 38.6
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.1e-29 134.8 294 40.1
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.4e-29 134.4 339 36.9
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 4.1e-29 132.9 295 38.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 4.6e-28 129.4 349 37.8
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.3e-27 127.9 285 37.5
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.3e-27 127.9 286 37.1
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 3.0e-27 126.7 266 38.3
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 6.6e-27 125.6 332 36.1
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.5e-26 124.4 300 37.0
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.9e-26 124.0 312 37.2
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.9e-26 124.0 294 38.4
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 3.3e-26 123.2 294 38.4
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 3.3e-26 123.2 295 38.3
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.3e-26 122.9 317 36.6
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 7.3e-26 122.1 191 49.2
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.2e-25 121.3 315 36.5
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 2.8e-25 120.2 280 37.1
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 3.6e-25 119.8 320 37.8
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.6e-25 119.8 301 36.9
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 8.1e-25 118.6 279 37.6
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 8.1e-25 118.6 349 38.1
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.8e-24 117.5 298 35.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 1.8e-24 117.5 201 44.8
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 5.2e-24 115.9 296 36.5
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 5.2e-24 115.9 296 36.5
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 6.8e-24 115.5 294 36.7
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 8.9e-24 115.2 295 36.3
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 8.9e-24 115.2 299 33.4
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 3.4e-23 113.2 306 37.6
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.4e-23 113.2 306 38.6
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 5.8e-23 112.5 306 37.3
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.3e-22 111.3 293 35.2
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.7e-22 110.9 332 34.9
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.7e-22 110.9 300 36.0
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 3.7e-22 109.8 305 38.4
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 6.4e-22 109.0 307 36.2
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 6.4e-22 109.0 206 41.3
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 8.3e-22 108.6 108 60.2
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.1e-21 108.2 319 37.9
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.9e-21 107.5 77 79.2
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 2.4e-21 107.1 292 34.9
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 3.2e-21 106.7 199 43.2
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 5.4e-21 105.9 308 37.3
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 5.4e-21 105.9 282 36.5
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 9.2e-21 105.1 309 35.6
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.2e-20 104.8 309 37.2
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 2.1e-20 104.0 290 34.8
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.5e-20 103.2 301 33.2
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 4.6e-20 102.8 299 36.1
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-19 101.7 199 42.2
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 3.0e-19 100.1 291 37.8
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 6.6e-19 99.0 293 34.5
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 8.6e-19 98.6 301 36.5
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 8.6e-19 98.6 291 34.4
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.5e-18 97.8 322 32.0
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.9e-18 97.4 299 34.1
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.5e-18 97.1 293 36.9
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 4.3e-18 96.3 177 41.8
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 4.3e-18 96.3 299 35.8
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-17 94.7 195 42.1
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.1e-17 94.0 301 32.6
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 1.4e-16 91.3 74 67.6
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.4e-16 90.5 260 35.4
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 8.9e-16 88.6 234 36.3
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-15 87.8 394 34.3
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 4.4e-15 86.3 298 31.9
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 9.9e-15 85.1 288 37.5
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 9.9e-15 85.1 294 33.3
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.7e-14 84.3 406 33.7
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 1.7e-14 84.3 281 31.0
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.4e-13 81.3 262 32.8
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.2e-13 80.1 286 30.8
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 9.2e-13 78.6 304 35.5
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 5.1e-11 72.8 294 31.3
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.3e-10 70.1 262 31.7
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 8.1e-09 65.5 134 35.1
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.4e-08 63.9 78 50.0
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 5.3e-08 62.8 286 32.9
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 6.9e-08 62.4 197 35.5
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 9.0e-08 62.0 283 29.7
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.2e-07 61.6 277 32.5
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.6e-07 60.5 246 30.1
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 4.4e-07 59.7 51 64.7
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 9.9e-07 58.5 228 28.9
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.3e-06 58.2 79 49.4
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.2e-06 57.4 272 29.0
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.9e-06 57.0 246 30.1
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 2.9e-06 57.0 299 28.4
Psat3g044240 Pisum sativum HOM05D004499 ORTHO05D004928 3.8e-06 56.6 62 56.5


User provided reference genes

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