Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 5.0e-149 531.2 287 100.0
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 1.0e-141 506.9 288 95.5
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 3.8e-141 505.0 288 94.8
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 1.9e-140 502.7 288 94.8
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 7.3e-132 474.2 288 87.8
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 9.5e-132 473.8 290 87.2
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 7.5e-129 464.2 283 87.6
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 4.9e-128 461.5 288 86.5
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 8.0e-123 444.1 285 82.8
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 1.1e-122 443.7 285 82.8
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 5.2e-122 441.4 275 85.5
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 2.9e-120 435.6 279 81.4
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 6.0e-118 427.9 263 85.6
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 1.0e-117 427.2 265 85.7
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 1.3e-117 426.8 263 85.6
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 2.3e-117 426.0 263 84.4
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 2.3e-117 426.0 263 85.6
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 3.0e-117 425.6 265 85.3
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 1.1e-116 423.7 265 84.5
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 1.5e-116 423.3 262 84.4
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 5.6e-116 421.4 261 83.1
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 5.6e-116 421.4 263 84.0
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 7.3e-116 421.0 264 83.3
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 1.6e-115 419.9 261 83.5
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 1.6e-115 419.9 263 83.7
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 3.6e-115 418.7 263 83.7
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 4.7e-115 418.3 263 84.4
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 4.7e-115 418.3 263 83.3
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 4.7e-115 418.3 262 85.1
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 8.1e-115 417.5 264 83.0
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 1.1e-114 417.2 255 84.7
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.4e-114 416.8 293 76.8
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.3e-114 416.0 263 82.9
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 3.1e-114 415.6 262 84.0
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 3.1e-114 415.6 260 83.1
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 3.1e-114 415.6 275 80.7
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.1e-114 415.6 263 82.5
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 4.0e-114 415.2 260 83.1
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 4.0e-114 415.2 263 82.9
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 5.2e-114 414.8 260 82.7
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 5.2e-114 414.8 262 83.2
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 6.8e-114 414.5 263 82.9
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 8.9e-114 414.1 262 83.6
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 1.2e-113 413.7 263 82.5
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.2e-113 413.7 263 82.5
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 1.5e-113 413.3 262 82.8
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 2.0e-113 412.9 262 82.4
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 2.0e-113 412.9 264 82.6
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 2.6e-113 412.5 260 82.7
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 2.6e-113 412.5 260 82.7
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 4.4e-113 411.8 263 83.3
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 4.4e-113 411.8 261 83.5
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 7.5e-113 411.0 283 77.4
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 9.9e-113 410.6 283 77.0
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 9.9e-113 410.6 262 82.1
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 1.7e-112 409.8 262 82.4
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 1.7e-112 409.8 262 82.4
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 2.2e-112 409.5 262 82.1
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 3.7e-112 408.7 262 81.7
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 4.9e-112 408.3 263 81.7
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 4.9e-112 408.3 263 81.4
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 6.4e-112 407.9 263 81.7
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 1.1e-111 407.1 280 77.1
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 1.1e-111 407.1 280 77.1
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 2.4e-111 406.0 262 80.9
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 2.4e-111 406.0 262 80.9
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 2.4e-111 406.0 262 80.5
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 2.4e-111 406.0 263 81.4
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 5.4e-111 404.8 261 82.8
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 5.4e-111 404.8 265 81.1
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 9.2e-111 404.1 263 80.2
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 1.2e-110 403.7 261 81.6
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 1.6e-110 403.3 276 78.3
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 2.7e-110 402.5 262 80.2
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 3.5e-110 402.1 263 80.2
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 4.6e-110 401.7 263 80.2
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 7.8e-110 401.0 263 80.6
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 1.0e-109 400.6 262 80.9
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 1.3e-109 400.2 263 79.5
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 3.0e-109 399.1 254 83.9
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 3.0e-109 399.1 264 80.3
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 1.5e-108 396.7 262 80.9
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 1.5e-108 396.7 258 80.2
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 7.3e-108 394.4 263 80.6
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 7.3e-108 394.4 263 78.3
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 9.5e-108 394.0 265 77.4
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 9.5e-108 394.0 252 82.1
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 2.1e-107 392.9 265 77.0
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 2.8e-107 392.5 255 81.6
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 3.6e-107 392.1 250 83.6
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 1.8e-106 389.8 251 82.1
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 2.4e-106 389.4 263 77.9
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 3.1e-106 389.0 255 80.8
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 4.0e-106 388.7 251 81.7
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 1.5e-105 386.7 286 76.6
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 1.7e-104 383.3 239 84.1
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 1.7e-104 383.3 261 76.6
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 4.9e-104 381.7 266 75.6
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 1.9e-103 379.8 285 74.4
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 3.5e-102 375.6 222 88.7
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 3.0e-101 372.5 262 73.7
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 6.6e-101 371.3 255 75.7
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 8.7e-101 370.9 266 71.8
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 1.9e-100 369.8 261 74.3
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 3.3e-100 369.0 221 86.9
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 2.1e-99 366.3 238 81.9
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 7.6e-97 357.8 263 71.9
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 9.9e-97 357.5 262 70.6
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 7.1e-95 351.3 260 71.2
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 6.0e-94 348.2 255 71.8
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 1.6e-91 340.1 274 65.0
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 8.1e-91 337.8 263 71.9
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 2.2e-88 329.7 254 67.3
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 2.4e-87 326.2 263 69.2
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 1.8e-82 310.1 209 79.4
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 2.4e-82 309.7 252 66.7
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.8e-66 256.9 179 74.3
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-66 256.1 255 53.7
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 6.5e-64 248.4 151 85.4
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 9.4e-63 244.6 161 80.7
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 7.9e-62 241.5 263 55.5
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 2.6e-57 226.5 152 78.3
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 4.8e-51 205.7 243 44.9
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 3.2e-47 193.0 253 42.3
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.2e-46 191.0 263 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 5.9e-41 172.2 239 41.4
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 7.0e-34 148.7 240 36.2
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 2.2e-32 143.7 96 78.1
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.2e-32 143.7 95 72.6
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.0e-29 134.8 75 89.3
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.2e-27 127.1 73 86.3
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 1.4e-26 124.4 117 62.4
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 1.2e-25 121.3 230 34.8
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 1.0e-21 108.2 96 62.5
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 5.4e-10 69.3 72 58.3


User provided reference genes

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