Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.7e-174 614.8 306 100.0
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 2.2e-158 562.4 276 100.0
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 8.2e-158 560.5 275 100.0
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 2.0e-151 539.3 280 93.2
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 3.3e-106 389.0 195 96.4
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 6.1e-44 182.2 87 98.9
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 1.2e-31 141.4 200 40.0
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 1.2e-31 141.4 200 40.0
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 2.6e-31 140.2 177 42.9
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 2.0e-26 124.0 194 34.5
arahy.Tifrunner.gnm1.ann1.QE2SNE Arachis hypogaea HOM05D002660 ORTHO05D013121 2.4e-24 117.1 172 41.3
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.6e-23 114.4 202 38.6
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 1.0e-22 111.7 224 34.4
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 2.2e-22 110.5 56 98.2
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 3.8e-22 109.8 233 32.2
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-17 94.7 223 29.1
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-17 94.7 223 29.1
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-17 94.7 223 29.1
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-17 94.7 223 29.1
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 2.2e-17 94.0 223 29.1
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.2e-17 94.0 81 56.8
Lalb_Chr00c24g0406801 Lupinus albus HOM05D002660 ORTHO05D011807 3.7e-17 93.2 87 49.4
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 2.4e-16 90.5 70 58.6
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 5.4e-16 89.4 74 55.4
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-15 87.0 181 33.1
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 3.5e-15 86.7 136 36.8
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 5.9e-15 85.9 73 52.1
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 5.9e-15 85.9 159 32.7
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 2.9e-14 83.6 73 54.8
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 8.6e-14 82.0 212 32.1
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 8.6e-14 82.0 212 32.1
Lsat_1_v5_gn_8_93880 Lactuca sativa HOM05D002660 ORTHO05D013121 1.9e-13 80.9 119 33.6
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 1.9e-13 80.9 141 34.8
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 2.5e-13 80.5 111 42.3
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 2.5e-13 80.5 73 54.8
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 7.2e-13 79.0 74 50.0
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 9.5e-13 78.6 69 53.6
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.2e-12 78.2 69 53.6
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.2e-12 78.2 69 53.6
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.1e-12 77.4 205 30.7
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.1e-12 77.4 205 30.7
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.1e-12 77.4 205 30.7
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 2.8e-12 77.0 69 49.3
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 2.8e-12 77.0 65 55.4
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.6e-12 76.6 229 29.7
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 3.6e-12 76.6 226 29.2
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 3.6e-12 76.6 226 29.2
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 3.6e-12 76.6 226 29.2
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 3.6e-12 76.6 71 52.1
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 3.6e-12 76.6 80 48.8
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.7e-12 76.3 73 52.1
CAN.G70.3 Capsicum annuum HOM05D002660 ORTHO05D003902 8.0e-12 75.5 137 37.2
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 8.0e-12 75.5 69 47.8
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.0e-11 75.1 200 29.5
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 1.8e-11 74.3 119 34.5
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 2.3e-11 73.9 163 28.8
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.8e-11 72.4 51 62.7
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.8e-11 72.4 51 62.7
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 8.9e-11 72.0 57 54.4
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 8.9e-11 72.0 73 50.7
SHI35938 Sapria himalayana HOM05D024615 ORTHO05D003902 1.5e-10 71.2 89 44.9
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 2.6e-10 70.5 69 47.8
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.4e-10 70.1 69 49.3
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 4.4e-10 69.7 65 53.8
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.4e-10 69.7 62 58.1
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 5.7e-10 69.3 59 57.6
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 7.5e-10 68.9 71 52.1
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 7.5e-10 68.9 68 48.5
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 7.5e-10 68.9 179 32.4
Actinidia11788 Actinidia chinensis HOM05D002660 ORTHO05D013121 9.8e-10 68.6 74 39.2
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 9.8e-10 68.6 92 39.1
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 9.8e-10 68.6 73 49.3
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 9.8e-10 68.6 73 47.9
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.3e-09 68.2 69 47.8
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 1.7e-09 67.8 69 44.9
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.7e-09 67.8 69 47.8
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 2.2e-09 67.4 78 47.4
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 3.7e-09 66.6 63 54.0
Eucgr.J01097 Eucalyptus grandis HOM05D002660 ORTHO05D011807 4.9e-09 66.2 71 40.8
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 4.9e-09 66.2 56 57.1
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 6.3e-09 65.9 113 36.3
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 6.3e-09 65.9 70 45.7
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 8.3e-09 65.5 69 47.8
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 8.3e-09 65.5 196 29.1
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 1.1e-08 65.1 70 50.0
Aa31csc822G10 Aethionema arabicum HOM05D002660 ORTHO05D013121 1.4e-08 64.7 107 30.8
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 1.8e-08 64.3 71 46.5
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.2e-08 63.5 66 51.5
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 5.4e-08 62.8 112 36.6
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 7.0e-08 62.4 73 41.1
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 7.0e-08 62.4 65 50.8
Dinv06709 Davidia involucrata HOM05D002660 ORTHO05D013121 7.0e-08 62.4 80 36.2
Nitab4.5_0000172g0830 Nicotiana tabacum HOM05D002660 ORTHO05D011807 7.0e-08 62.4 107 36.4
SHI35758 Sapria himalayana HOM05D024615 ORTHO05D003902 7.0e-08 62.4 52 57.7
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 7.0e-08 62.4 58 55.2
Solyc07g008830.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.0e-08 62.4 87 44.8
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-07 61.6 71 47.9
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-07 60.8 71 47.9
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-07 60.8 71 47.9
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-07 60.8 71 47.9
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 2.0e-07 60.8 71 47.9
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 2.0e-07 60.8 71 47.9
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.0e-07 60.8 71 47.9
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.5e-07 60.1 72 50.0
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.5e-07 60.1 72 50.0
CAN.G505.2 Capsicum annuum HOM05D002660 ORTHO05D003902 3.5e-07 60.1 63 47.6
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.5e-07 60.1 113 38.1
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 4.6e-07 59.7 72 48.6
MELO3C033917.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.6e-07 59.7 52 55.8
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.6e-07 59.7 52 53.8
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.6e-07 59.7 52 53.8
Nitab4.5_0009709g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 5.9e-07 59.3 108 34.3
Sc05g0004270 Simmondsia chinensis HOM05D002660 ORTHO05D011807 5.9e-07 59.3 70 35.7
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 7.8e-07 58.9 106 38.7
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 7.8e-07 58.9 60 50.0
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 7.8e-07 58.9 60 50.0
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.0e-06 58.5 63 50.8
Dinv06708 Davidia involucrata HOM05D002660 ORTHO05D003902 2.3e-06 57.4 51 56.9
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 2.9e-06 57.0 49 59.2
CsaV3_UNG194490 Cucumis sativus L. HOM05D002660 ORTHO05D003902 3.9e-06 56.6 50 56.0
Nitab4.5_0000172g1900 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.9e-06 56.6 111 33.3
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 3.9e-06 56.6 63 42.9
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 5.0e-06 56.2 179 29.1
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 5.0e-06 56.2 47 48.9
Peaxi162Scf00651g00640 Petunia axillaris HOM05D002660 ORTHO05D003902 5.0e-06 56.2 52 57.7
Peaxi162Scf01528g00009 Petunia axillaris HOM05D010952 ORTHO05D017366 5.0e-06 56.2 52 57.7
SGA_v2.0_scaffold400G50959 Striga asiatica HOM05D002660 ORTHO05D003902 5.0e-06 56.2 91 29.7
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 8.6e-06 55.5 106 39.6
Nitab4.5_0001152g0860 Nicotiana tabacum HOM05D002660 ORTHO05D003902 8.6e-06 55.5 59 50.8
SHI02522 Sapria himalayana HOM05D002660 ORTHO05D003902 8.6e-06 55.5 58 51.7


User provided reference genes

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