Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 5.3e-107 391.0 189 100.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.3e-52 210.3 190 56.3
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 5.4e-43 178.3 195 49.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.0e-38 162.2 201 44.3
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 6.9e-38 161.4 180 47.8
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.0e-37 159.8 189 42.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.0e-37 159.8 179 44.7
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 5.8e-37 158.3 182 45.6
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.7e-36 156.8 193 43.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.2e-36 156.4 179 45.3
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.2e-36 156.4 181 45.3
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.8e-36 155.6 184 45.1
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 4.9e-36 155.2 181 44.2
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.9e-36 155.2 199 43.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 6.4e-36 154.8 182 44.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.9e-35 153.3 185 44.9
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-35 152.9 192 44.3
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.2e-35 152.1 181 43.6
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 5.4e-35 151.8 182 44.5
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 7.1e-35 151.4 180 43.3
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.6e-34 150.2 195 42.6
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.6e-34 150.2 203 40.9
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.1e-34 149.8 182 44.5
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.1e-34 149.8 185 42.2
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.7e-34 149.4 185 44.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.7e-34 149.4 198 40.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.7e-34 149.4 213 39.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 3.5e-34 149.1 190 42.6
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.5e-34 149.1 189 41.3
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.5e-34 149.1 192 42.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.5e-34 149.1 188 45.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 6.0e-34 148.3 182 41.8
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.0e-34 148.3 188 43.6
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.3e-33 147.1 217 41.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.3e-33 147.1 197 42.6
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.3e-33 147.1 185 40.5
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.7e-33 146.7 196 41.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.7e-33 146.7 191 44.0
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 2.3e-33 146.4 209 42.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.3e-33 146.4 193 43.5
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 3.9e-33 145.6 188 42.6
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.9e-33 145.6 203 42.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.9e-33 145.6 204 41.2
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 5.1e-33 145.2 195 44.1
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 6.6e-33 144.8 201 41.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.6e-33 144.8 201 41.8
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 6.6e-33 144.8 201 42.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 6.6e-33 144.8 190 42.1
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.1e-32 144.1 205 41.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.1e-32 144.1 196 42.9
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.1e-32 144.1 200 41.5
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.1e-32 144.1 198 43.4
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.5e-32 143.7 205 40.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.9e-32 143.3 210 40.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-32 143.3 200 40.5
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-32 143.3 207 40.6
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.9e-32 143.3 207 40.6
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.5e-32 142.9 187 42.8
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.5e-32 142.9 187 42.8
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.5e-32 142.9 203 42.9
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.5e-32 142.9 195 40.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.3e-32 142.5 208 41.3
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.3e-32 142.5 195 42.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.3e-32 142.5 195 42.1
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.3e-32 142.1 187 40.1
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.3e-32 142.1 181 43.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 5.6e-32 141.7 218 37.6
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 5.6e-32 141.7 206 38.8
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.3e-32 141.4 207 40.6
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 9.6e-32 141.0 194 41.8
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 9.6e-32 141.0 206 39.3
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.3e-31 140.6 159 45.3
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.6e-31 140.2 199 40.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.1e-31 139.8 194 41.8
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 3.6e-31 139.0 215 40.0
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 3.6e-31 139.0 198 40.9
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.8e-31 138.7 208 39.9
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.8e-31 138.7 194 42.8
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 4.8e-31 138.7 202 41.1
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 6.2e-31 138.3 193 38.3
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 6.2e-31 138.3 182 41.2
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.4e-30 137.1 229 41.0
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.4e-30 137.1 193 42.0
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.8e-30 136.7 208 39.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.8e-30 136.7 202 41.1
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.8e-30 136.7 188 39.9
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.4e-30 136.3 205 40.0
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.4e-30 136.3 207 40.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.1e-30 136.0 210 39.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.1e-30 136.0 210 40.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.0e-30 135.6 177 42.4
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.0e-30 135.6 194 40.7
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.0e-30 135.6 194 40.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 5.3e-30 135.2 220 39.5
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 6.9e-30 134.8 203 37.9
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 6.9e-30 134.8 201 39.3
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-29 134.0 154 44.2
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.0e-29 133.3 204 39.2
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.0e-29 133.3 214 38.3
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.6e-29 132.9 209 38.8
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 3.4e-29 132.5 215 37.7
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 3.4e-29 132.5 199 41.7
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.5e-29 132.1 211 39.8
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.5e-29 132.1 216 38.9
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.5e-29 132.1 208 38.5
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 9.9e-29 131.0 94 58.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.3e-28 130.6 197 37.6
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.7e-28 130.2 209 37.3
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.7e-28 130.2 153 42.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.7e-28 130.2 181 38.1
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.2e-28 129.8 200 38.5
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 6.4e-28 128.3 196 39.8
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 6.4e-28 128.3 205 40.0
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 8.4e-28 127.9 134 45.5
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.1e-27 127.5 196 39.3
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.4e-27 127.1 137 45.3
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.4e-27 126.3 177 40.7
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.1e-26 123.2 147 43.5
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-26 123.2 175 38.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.5e-26 122.5 153 43.1
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-25 120.9 139 42.4
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.3e-25 119.8 199 35.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 9.6e-24 114.4 130 41.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.3e-23 114.0 134 44.8
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.6e-23 113.6 104 53.8
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.8e-23 112.8 133 41.4
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.8e-23 112.8 158 39.9
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.7e-23 112.5 193 36.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.8e-23 112.1 113 46.0
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.1e-22 110.9 154 39.6
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.5e-21 107.1 186 34.9
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.3e-20 104.0 117 45.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.1e-19 100.9 78 50.0
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.1e-19 100.9 125 40.0
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.9e-19 100.1 79 49.4
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 9.3e-19 97.8 132 38.6
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.1e-18 96.7 129 40.3
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 4.6e-18 95.5 102 45.1
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 7.9e-18 94.7 74 52.7
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.3e-17 94.0 108 37.0
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.9e-16 90.1 95 42.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.6e-16 88.6 111 41.4
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.4e-14 83.2 137 38.7
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 4.0e-14 82.4 188 30.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.6e-13 79.7 90 37.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.2e-12 76.6 88 39.8
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.9e-11 73.6 81 42.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.3e-09 66.6 87 39.1
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 3.9e-09 65.9 120 38.3
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.9e-08 63.5 121 36.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.3e-08 62.8 121 36.4


User provided reference genes

Program Settings