Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03440_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 3.7e-129 464.9 243 100.0
Ca_08778_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 3.7e-129 464.9 243 100.0
Medtr7g087140 Medicago truncatula HOM05D006208 ORTHO05D007606 1.1e-93 347.1 233 79.4
Lj1g0003173 Lotus japonicus HOM05D006208 ORTHO05D007606 1.8e-83 313.2 245 71.4
Glyma.19G119400 Glycine max HOM05D006208 ORTHO05D007606 5.8e-82 308.1 234 70.5
Lalb_Chr22g0358421 Lupinus albus HOM05D006208 ORTHO05D007606 8.4e-81 304.3 236 69.9
VMungo1383G1214 Vigna mungo HOM05D006208 ORTHO05D007606 4.2e-80 302.0 239 69.5
Psat3g085200 Pisum sativum HOM05D006208 ORTHO05D007606 4.6e-79 298.5 189 84.7
QL07p016540 Quercus lobata HOM05D006208 ORTHO05D007606 1.5e-74 283.5 233 66.1
Thecc.05G239100 Theobroma cacao HOM05D006208 ORTHO05D007606 1.1e-72 277.3 241 61.8
MD12G1014000 Malus domestica HOM05D006208 ORTHO05D007606 2.7e-71 272.7 232 62.9
RcHm_v2.0_Chr3g0495701 Rosa chinensis HOM05D006208 ORTHO05D007606 4.6e-71 271.9 231 63.2
Duzib177G0527 Durio zibethinus HOM05D006208 ORTHO05D007606 5.1e-70 268.5 239 60.7
COL.COLO4_08902 Corchorus olitorius HOM05D006208 ORTHO05D007606 2.2e-68 263.1 236 60.2
Manes.08G150900 Manihot esculenta HOM05D006208 ORTHO05D007606 2.2e-68 263.1 238 61.3
TWI34G1475 Tripterygium wilfordii HOM05D006208 ORTHO05D007606 4.8e-68 261.9 235 60.9
Lj1A1159G88 Lonicera japonica HOM05D006208 ORTHO05D007606 2.4e-67 259.6 244 61.1
Gorai.013G113800 Gossypium raimondii HOM05D006208 ORTHO05D007606 6.9e-67 258.1 210 63.3
FAN13G0695 Fragaria x ananassa HOM05D006208 ORTHO05D007606 1.2e-66 257.3 240 60.0
MELO3C019160.2 Cucumis melo HOM05D006208 ORTHO05D007606 2.0e-66 256.5 234 59.4
Gohir.D13G101700 Gossypium hirsutum HOM05D006208 ORTHO05D007606 3.4e-66 255.8 233 58.8
Phvul.001G107700 Phaseolus vulgaris HOM05D006208 ORTHO05D007606 5.9e-66 255.0 183 74.9
Ciclev10032470m.g Citrus clementina HOM05D006208 ORTHO05D007606 1.0e-65 254.2 235 58.3
Gohir.A13G096300 Gossypium hirsutum HOM05D006208 ORTHO05D007606 2.9e-65 252.7 233 58.4
FAN04G2426 Fragaria x ananassa HOM05D006208 ORTHO05D007606 5.0e-65 251.9 237 59.9
vmacro07634 Vaccinium macrocarpon HOM05D006208 ORTHO05D007606 5.0e-65 251.9 250 57.6
FAN18G4346 Fragaria x ananassa HOM05D006208 ORTHO05D007606 6.5e-65 251.5 238 60.5
GSVIVG01029918001 Vitis vinifera HOM05D006208 ORTHO05D007606 6.5e-65 251.5 236 58.1
arahy.Tifrunner.gnm1.ann1.71CHM8 Arachis hypogaea HOM05D006208 ORTHO05D007606 5.5e-64 248.4 238 60.9
FvH4_5g39040 Fragaria vesca HOM05D006208 ORTHO05D007606 7.2e-64 248.1 230 60.9
Sabra13G0059000 Salix brachista HOM05D006208 ORTHO05D007606 2.1e-63 246.5 236 56.8
PGSC0003DMG400008402 Solanum tuberosum HOM05D006208 ORTHO05D007606 2.1e-63 246.5 233 56.7
Potri.013G067600 Populus trichocarpa HOM05D006208 ORTHO05D007606 2.7e-63 246.1 245 55.5
Cfa019872 Carpinus fangiana HOM05D006208 ORTHO05D007606 4.6e-63 245.4 209 60.3
BraA06t23774Z Brassica rapa HOM05D000200 ORTHO05D000262 6.1e-63 245.0 237 56.1
A06p05650 Brassica napus HOM05D000200 ORTHO05D000262 1.4e-62 243.8 237 55.7
Dinv14560 Davidia involucrata HOM05D006208 ORTHO05D007606 2.3e-62 243.0 248 57.7
Sopen10g035070 Solanum pennellii HOM05D006208 ORTHO05D007606 2.3e-62 243.0 238 55.0
CARHR008630 Cardamine hirsuta HOM05D006208 ORTHO05D007606 3.9e-62 242.3 232 57.3
CAN.G1018.11 Capsicum annuum HOM05D006208 ORTHO05D007606 5.1e-62 241.9 244 52.5
CANSAT78G0878 Cannabis sativa HOM05D006208 ORTHO05D007606 6.7e-62 241.5 236 57.2
AT1G08710 Arabidopsis thaliana HOM05D006208 ORTHO05D007606 8.8e-62 241.1 232 57.8
BcaB07g34110 Brassica carinata HOM05D006208 ORTHO05D007606 1.5e-61 240.4 234 57.7
EL10As12g24012 Beta vulgaris HOM05D006208 ORTHO05D007606 2.0e-61 240.0 236 56.8
Solyc10g085660.3 Solanum lycopersicum HOM05D006208 ORTHO05D007606 2.0e-61 240.0 232 55.2
BcaC05g24798 Brassica carinata HOM05D006208 ORTHO05D007606 4.3e-61 238.8 232 55.2
Eucgr.K01547 Eucalyptus grandis HOM05D006208 ORTHO05D007606 9.7e-61 237.7 238 55.5
Carub.0001s0806 Capsella rubella HOM05D006208 ORTHO05D007606 1.3e-60 237.3 231 55.4
FvH4_3g02594 Fragaria vesca HOM05D006208 ORTHO05D007606 1.7e-60 236.9 234 57.7
AL1G19150 Arabidopsis lyrata HOM05D006208 ORTHO05D007606 2.8e-60 236.1 236 55.5
Nitab4.5_0000381g0210 Nicotiana tabacum HOM05D006208 ORTHO05D007606 1.4e-59 233.8 213 57.7
CiPaw.09G165300 Carya illinoinensis HOM05D006208 ORTHO05D007606 1.8e-59 233.4 234 57.7
Nitab4.5_0015172g0010 Nicotiana tabacum HOM05D006208 ORTHO05D007606 2.4e-59 233.0 213 57.7
AUR62036506 Chenopodium quinoa HOM05D006208 ORTHO05D007606 6.9e-59 231.5 249 52.2
Atru.chr2.1570 Acer truncatum HOM05D006208 ORTHO05D007606 1.2e-58 230.7 232 56.5
Hma1.2p1_1127F.1_g259670 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 1.0e-57 227.6 238 55.0
Migut.B00931 Erythranthe guttata HOM05D006208 ORTHO05D007606 1.7e-57 226.9 230 54.3
Hund10725 Selenicereus undatus HOM05D006208 ORTHO05D007606 2.9e-57 226.1 244 54.5
Thhalv10008513m.g Eutrema salsugineum HOM05D006208 ORTHO05D007606 6.5e-57 224.9 244 53.7
Cc03_g15330 Coffea canephora HOM05D006208 ORTHO05D007606 1.1e-56 224.2 246 51.2
Nn8g39480 Nelumbo nucifera HOM05D006208 ORTHO05D007606 3.2e-56 222.6 241 53.9
ClCG04G006060 Citrullus lanatus HOM05D006208 ORTHO05D007606 4.2e-56 222.2 300 47.0
Aa31sc449G40 Aethionema arabicum HOM05D006208 ORTHO05D007606 7.2e-56 221.5 238 47.9
SGA_v2.0_scaffold66G22407 Striga asiatica HOM05D006208 ORTHO05D007606 7.2e-56 221.5 247 50.6
Haze_20379 Corylus avellana HOM05D006208 ORTHO05D007606 4.7e-55 218.8 235 52.8
DCAR_020701 Daucus carota HOM05D006208 ORTHO05D007606 7.9e-55 218.0 237 53.2
MBI19_g04334_MAGBIO Magnolia biondii HOM05D006208 ORTHO05D007606 7.9e-55 218.0 230 56.1
THA.LOC104798848 Tarenaya hassleriana HOM05D006208 ORTHO05D007606 1.0e-54 217.6 244 51.6
Peaxi162Scf00146g00097 Petunia axillaris HOM05D006208 ORTHO05D007606 1.8e-54 216.9 236 50.0
MSTRG.19726 Avicennia marina HOM05D006208 ORTHO05D007606 1.5e-53 213.8 245 49.8
unitig_0.g581 Utricularia gibba HOM05D006208 ORTHO05D007606 1.5e-53 213.8 247 51.0
arahy.Tifrunner.gnm1.ann1.2NMK5X Arachis hypogaea HOM05D006208 ORTHO05D007606 2.0e-53 213.4 191 63.9
Hma1.2p1_0776F.1_g216610 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 2.6e-53 213.0 214 56.5
Sp1g07360 Schrenkiella parvula HOM05D006208 ORTHO05D007606 7.4e-53 211.5 241 50.2
Sed0009124 Sechium edule HOM05D006208 ORTHO05D007606 1.4e-51 207.2 234 52.6
ECA232G0512 Erigeron canadensis HOM05D006208 ORTHO05D007606 9.1e-51 204.5 227 49.8
SalBow6G5221 Salvia bowleyana HOM05D006208 ORTHO05D007606 5.9e-50 201.8 250 46.0
Aqoxy6G01592 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 7.7e-50 201.4 242 48.3
Peaxi162Scf00146g00107 Petunia axillaris HOM05D006208 ORTHO05D007606 3.2e-48 196.1 208 51.0
Peaxi162Scf62544g00003 Petunia axillaris HOM05D006208 ORTHO05D007606 3.2e-48 196.1 208 51.0
CsaV3_4G029050 Cucumis sativus L. HOM05D006208 ORTHO05D007606 4.2e-48 195.7 176 60.8
Ah.12g062010 Amaranthus hybridus HOM05D006208 ORTHO05D007606 9.4e-48 194.5 200 54.5
ATR0068G109 Amborella trichopoda HOM05D006208 ORTHO05D007606 6.1e-47 191.8 241 46.1
HPP92_022884 Vanilla planifolia HOM05D006208 ORTHO05D007606 4.4e-45 185.7 209 48.8
TPR.G7831 Trifolium pratense HOM05D006208 ORTHO05D007606 2.8e-44 183.0 147 67.3
HanXRQChr09g0255371 Helianthus annuus HOM05D006208 ORTHO05D007606 2.1e-39 166.8 199 48.2
Lsat_1_v5_gn_4_159701 Lactuca sativa HOM05D006208 ORTHO05D007606 1.7e-36 157.1 204 45.1
TAR636G0902 Trochodendron aralioides HOM05D006208 ORTHO05D007606 1.1e-35 154.5 159 53.5
SEGI_27241 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 1.8e-35 153.7 211 42.2
Cpa.g.sc73.15 Carica papaya HOM05D006208 ORTHO05D007606 5.3e-35 152.1 173 50.9
Os01g0814700 Oryza sativa ssp. japonica HOM05D006208 ORTHO05D007606 1.2e-34 151.0 186 46.8
Zm00001eb149890 Zea mays HOM05D006208 ORTHO05D007606 3.5e-34 149.4 184 45.7
Prupe.7G018500 Prunus persica HOM05D006208 ORTHO05D007606 3.8e-33 146.0 142 57.0
TPR.G35926 Trifolium pratense HOM05D006208 ORTHO05D007606 4.2e-32 142.5 102 77.5
CDE09G0594 Ceratophyllum demersum HOM05D002946 ORTHO05D007606 2.7e-31 139.8 172 49.4
Rhsim03G0045600 Rhododendron simsii HOM05D006208 ORTHO05D007606 3.0e-30 136.3 157 52.2
VMungo1383G2538 Vigna mungo HOM05D006208 ORTHO05D007606 4.4e-29 132.5 146 54.8
Rhsim03G0045700 Rhododendron simsii HOM05D006208 ORTHO05D007606 2.8e-28 129.8 101 67.3
AUR62037069 Chenopodium quinoa HOM05D006208 ORTHO05D007606 4.8e-28 129.0 110 63.6
C05p06800 Brassica napus HOM05D006208 ORTHO05D007606 3.1e-27 126.3 134 50.0
BolC5t29439H Brassica oleracea HOM05D006208 ORTHO05D007606 1.6e-26 124.0 134 49.3
Pp3c18_14450 Physcomitrium patens HOM05D006208 ORTHO05D007606 1.6e-26 124.0 252 31.3
Medtr7g087170 Medicago truncatula HOM05D006208 ORTHO05D007606 5.9e-26 122.1 127 59.1
Sc22g0000860 Simmondsia chinensis HOM05D006208 ORTHO05D007606 5.9e-26 122.1 112 58.9
SMO351G0165 Selaginella moellendorffii HOM05D006208 ORTHO05D007606 2.1e-23 113.6 220 34.1
FAN08G0500 Fragaria x ananassa HOM05D006208 ORTHO05D007606 3.6e-23 112.8 93 65.6
TPR.G15311 Trifolium pratense HOM05D006208 ORTHO05D007606 1.4e-22 110.9 83 71.1
Medtr7g087330 Medicago truncatula HOM05D006208 ORTHO05D007606 1.5e-21 107.5 100 61.0
SHI14855 Sapria himalayana HOM05D000023 ORTHO05D000014 6.3e-20 102.1 178 39.9
CBR_g36542 Chara braunii HOM05D006208 ORTHO05D007606 2.4e-19 100.1 217 32.7
FAN21G1425 Fragaria x ananassa HOM05D006208 ORTHO05D007606 5.4e-19 99.0 85 64.7
TPR.G7822 Trifolium pratense HOM05D006208 ORTHO05D007606 3.5e-18 96.3 201 38.8
Sc22g0000880 Simmondsia chinensis HOM05D006208 ORTHO05D007606 6.1e-15 85.5 154 38.3
C05p06810 Brassica napus HOM05D000200 ORTHO05D000262 8.9e-14 81.6 78 53.8
BolC5t29440H Brassica oleracea HOM05D000200 ORTHO05D000262 8.9e-14 81.6 78 53.8
Oeu054958.1 Olea europaea HOM05D006208 ORTHO05D007606 2.6e-13 80.1 83 51.8
Peaxi162Scf00146g00108 Petunia axillaris HOM05D006208 ORTHO05D007606 3.4e-13 79.7 73 54.8
TPR.G7816 Trifolium pratense HOM05D006208 ORTHO05D007606 4.4e-13 79.3 66 63.6
SHI14857 Sapria himalayana HOM05D006208 ORTHO05D007606 2.9e-12 76.6 55 67.3
Aqoxy3G03662 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 4.9e-12 75.9 129 36.4
Oeu029768.1 Olea europaea HOM05D006208 ORTHO05D007606 1.9e-11 73.9 75 44.0
Oeu029769.2 Olea europaea HOM05D006208 ORTHO05D007606 6.0e-10 68.9 75 41.3
arahy.Tifrunner.gnm1.ann1.Q1DBZB Arachis hypogaea HOM05D006208 ORTHO05D007606 1.7e-09 67.4 61 55.7
AL5G15230 Arabidopsis lyrata HOM05D001124 ORTHO05D007606 6.6e-09 65.5 67 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1480 Anthoceros agrestis HOM05D006208 ORTHO05D007606 1.1e-08 64.7 141 29.8
Aqoxy3G03625 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 3.3e-08 63.2 134 34.3
SalBow5G5293 Salvia bowleyana HOM05D000001 ORTHO05D009952 2.1e-07 60.5 106 38.7
Oeu032547.1 Olea europaea HOM05D006208 ORTHO05D007606 1.1e-06 58.2 57 40.4
Pp3c18_14463 Physcomitrium patens HOM05D006208 ORTHO05D007606 6.8e-06 55.5 108 33.3
SEGI_30866 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 8.9e-06 55.1 69 43.5


User provided reference genes

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