Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 6.8e-24 114.0 58 100.0
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 1.2e-15 86.7 58 69.0
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 2.6e-15 85.5 60 70.0
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 4.4e-15 84.7 58 65.5
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 2.9e-14 82.0 60 66.7
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 2.9e-14 82.0 58 69.0
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 1.1e-13 80.1 55 65.5
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 2.4e-13 79.0 59 64.4
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 1.6e-12 76.3 57 66.7
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 2.0e-12 75.9 54 59.3
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 7.8e-12 73.9 55 65.5
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 7.8e-12 73.9 58 63.8
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 1.0e-11 73.6 59 64.4
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 1.3e-11 73.2 57 64.9
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.3e-11 73.2 55 61.8
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 1.7e-11 72.8 61 59.0
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 6.6e-11 70.9 58 58.6
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 6.6e-11 70.9 54 61.1
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 1.9e-10 69.3 58 60.3
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 4.3e-10 68.2 61 65.6
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 1.2e-09 66.6 59 55.9
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 1.2e-09 66.6 59 54.2
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 1.2e-09 66.6 59 57.6
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.6e-09 66.2 60 56.7
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.6e-09 66.2 60 56.7
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 1.6e-09 66.2 60 56.7
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 1.6e-09 66.2 52 63.5
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 1.6e-09 66.2 58 51.7
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 1.1e-08 63.5 55 60.0
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 1.1e-08 63.5 61 63.9
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 1.1e-08 63.5 62 58.1
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 1.4e-08 63.2 44 63.6
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.8e-08 62.8 60 61.7
Medtr1g069085 Medicago truncatula HOM05D007427 ORTHO05D006413 1.8e-08 62.8 58 56.9
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 2.3e-08 62.4 50 60.0
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 2.3e-08 62.4 67 52.2
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 4.0e-08 61.6 53 62.3
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 4.0e-08 61.6 50 56.0
Psat6g064560 Pisum sativum HOM05D007427 ORTHO05D006413 4.0e-08 61.6 58 53.4
Glyma.13G130600 Glycine max HOM05D007427 ORTHO05D006413 2.0e-07 59.3 52 57.7
Lsat_1_v5_gn_9_11040 Lactuca sativa HOM05D047643 ORTHO05D006413 2.0e-07 59.3 62 54.8
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 2.0e-07 59.3 61 59.0
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 2.0e-07 59.3 58 51.7
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 2.0e-07 59.3 70 48.6
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 2.6e-07 58.9 61 50.8
Lalb_Chr02g0152981 Lupinus albus HOM05D007427 ORTHO05D006413 2.6e-07 58.9 60 56.7
ECA236G2240 Erigeron canadensis HOM05D007427 ORTHO05D006413 3.4e-07 58.5 59 55.9
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 4.4e-07 58.2 63 46.0
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 4.4e-07 58.2 54 53.7
Sopen09g025130 Solanum pennellii HOM05D014142 ORTHO05D006413 4.4e-07 58.2 56 58.9
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 4.4e-07 58.2 59 55.9
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 5.8e-07 57.8 55 56.4
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 5.8e-07 57.8 63 54.0
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 5.8e-07 57.8 63 54.0
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 7.5e-07 57.4 54 51.9
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 7.5e-07 57.4 74 48.6
Cc01_g17390 Coffea canephora HOM05D007427 ORTHO05D006413 7.5e-07 57.4 55 58.2
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 7.5e-07 57.4 60 51.7
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 7.5e-07 57.4 54 53.7
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 7.5e-07 57.4 63 54.0
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 7.5e-07 57.4 63 54.0
Nitab4.5_0001657g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 7.5e-07 57.4 58 55.2
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 9.8e-07 57.0 46 56.5
DCAR_004704 Daucus carota HOM05D007427 ORTHO05D006413 9.8e-07 57.0 63 47.6
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 9.8e-07 57.0 50 58.0
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 9.8e-07 57.0 54 53.7
SGA_v2.0_scaffold8G04664 Striga asiatica HOM05D007427 ORTHO05D006413 9.8e-07 57.0 53 54.7
Nitab4.5_0000813g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 1.3e-06 56.6 58 53.4
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.2e-06 55.8 67 47.8
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.2e-06 55.8 67 47.8
Sopen09g025110 Solanum pennellii HOM05D014142 ORTHO05D006413 2.2e-06 55.8 56 57.1
PGSC0003DMG400015809 Solanum tuberosum HOM05D014142 ORTHO05D006413 2.2e-06 55.8 56 55.4
Sopen09g025140 Solanum pennellii HOM05D014142 ORTHO05D006413 2.9e-06 55.5 56 55.4
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 3.7e-06 55.1 53 54.7
Duzib138G0919 Durio zibethinus HOM05D007427 ORTHO05D006413 4.9e-06 54.7 81 38.3
AL7G23430 Arabidopsis lyrata HOM05D008344 ORTHO05D006413 6.4e-06 54.3 55 58.2
Thhalv10026613m.g Eutrema salsugineum HOM05D008344 ORTHO05D006413 6.4e-06 54.3 55 58.2
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 6.4e-06 54.3 57 52.6
AT4G29030 Arabidopsis thaliana HOM05D008344 ORTHO05D006413 8.3e-06 53.9 55 58.2


User provided reference genes

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