Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.4e-59 233.0 140 100.0
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 6.0e-47 191.0 139 74.8
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 7.6e-42 174.1 138 77.5
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 5.1e-38 161.4 155 59.4
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 1.8e-30 136.3 118 59.3
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.8e-27 126.3 128 63.3
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 6.9e-27 124.4 84 71.4
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.2e-26 123.6 91 65.9
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 4.5e-26 121.7 138 50.7
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.2e-25 119.4 75 68.0
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.2e-25 119.4 75 68.0
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 2.2e-25 119.4 75 68.0
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.9e-25 119.0 119 59.7
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 4.9e-25 118.2 125 56.8
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 6.4e-25 117.9 90 63.3
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 8.4e-25 117.5 81 65.4
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.1e-24 117.1 90 63.3
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 2.4e-24 115.9 91 63.7
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 4.2e-24 115.2 91 59.3
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 7.1e-24 114.4 86 62.8
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 9.3e-24 114.0 77 64.9
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 9.3e-24 114.0 131 59.5
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.2e-23 113.6 81 61.7
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 1.6e-23 113.2 86 60.5
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.6e-23 113.2 119 46.2
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 1.6e-23 113.2 78 64.1
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 2.7e-23 112.5 73 68.5
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 2.7e-23 112.5 72 69.4
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 4.6e-23 111.7 68 70.6
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 6.0e-23 111.3 66 71.2
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 6.0e-23 111.3 73 65.8
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 6.0e-23 111.3 73 65.8
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 1.0e-22 110.5 90 58.9
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 1.8e-22 109.8 74 59.5
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.8e-22 109.8 89 60.7
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.8e-22 109.8 73 67.1
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.8e-22 109.8 74 66.2
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 2.3e-22 109.4 93 59.1
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 2.3e-22 109.4 92 58.7
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 2.3e-22 109.4 74 64.9
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 3.9e-22 108.6 70 64.3
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 6.7e-22 107.8 75 62.7
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 1.1e-21 107.1 75 62.7
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.5e-21 106.7 91 52.7
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.5e-21 106.7 92 56.5
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 1.5e-21 106.7 75 62.7
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.9e-21 106.3 92 55.4
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.9e-21 106.3 74 63.5
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.9e-21 106.3 134 44.0
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 2.5e-21 105.9 86 58.1
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 2.5e-21 105.9 70 65.7
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 2.5e-21 105.9 91 56.0
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 3.3e-21 105.5 86 59.3
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 4.3e-21 105.1 85 60.0
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 4.3e-21 105.1 70 62.9
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 5.6e-21 104.8 91 54.9
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 5.6e-21 104.8 72 59.7
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 5.6e-21 104.8 70 62.9
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 7.4e-21 104.4 87 57.5
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 7.4e-21 104.4 73 60.3
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 7.4e-21 104.4 76 64.5
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 7.4e-21 104.4 90 53.3
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 9.6e-21 104.0 74 63.5
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 9.6e-21 104.0 74 63.5
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 9.6e-21 104.0 69 62.3
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 9.6e-21 104.0 113 45.1
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.6e-20 103.2 74 59.5
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 2.1e-20 102.8 101 50.5
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 2.1e-20 102.8 85 55.3
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.8e-20 102.4 92 56.5
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.8e-20 102.4 86 57.0
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 3.7e-20 102.1 68 61.8
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 3.7e-20 102.1 74 60.8
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 3.7e-20 102.1 80 56.2
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 3.7e-20 102.1 90 56.7
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 4.8e-20 101.7 87 54.0
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 6.2e-20 101.3 64 65.6
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 6.2e-20 101.3 138 47.1
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 8.1e-20 100.9 72 62.5
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.1e-19 100.5 71 62.0
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 1.1e-19 100.5 60 65.0
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 1.1e-19 100.5 86 53.5
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 1.1e-19 100.5 86 53.5
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 1.1e-19 100.5 64 65.6
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.4e-19 100.1 75 58.7
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-19 100.1 147 40.1
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.4e-19 100.1 93 51.6
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 1.4e-19 100.1 87 52.9
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 1.8e-19 99.8 113 53.1
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 1.8e-19 99.8 92 53.3
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.8e-19 99.8 76 57.9
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.4e-19 99.4 143 44.1
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 2.4e-19 99.4 74 58.1
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 3.1e-19 99.0 77 61.0
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 3.1e-19 99.0 92 52.2
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 3.1e-19 99.0 80 55.0
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 4.0e-19 98.6 121 51.2
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 5.3e-19 98.2 69 60.9
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 5.3e-19 98.2 64 65.6
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 5.3e-19 98.2 116 47.4
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 5.3e-19 98.2 116 43.1
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 5.3e-19 98.2 70 58.6
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 5.3e-19 98.2 86 54.7
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 9.0e-19 97.4 86 51.2
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 9.0e-19 97.4 85 56.5
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 9.0e-19 97.4 97 50.5
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 1.2e-18 97.1 119 44.5
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 1.2e-18 97.1 119 44.5
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 2.0e-18 96.3 97 46.4
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 4.5e-18 95.1 91 52.7
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 4.5e-18 95.1 71 59.2
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 5.8e-18 94.7 64 62.5
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 5.8e-18 94.7 133 46.6
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 5.8e-18 94.7 74 55.4
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 7.6e-18 94.4 140 41.4
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 1.3e-17 93.6 93 52.7
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.7e-17 93.2 92 50.0
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 2.2e-17 92.8 108 42.6
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 2.2e-17 92.8 133 45.1
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 2.9e-17 92.4 74 55.4
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 4.9e-17 91.7 81 54.3
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 4.9e-17 91.7 75 54.7
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 4.9e-17 91.7 139 38.1
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 8.4e-17 90.9 131 44.3
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.1e-16 90.5 80 52.5
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 1.4e-16 90.1 92 45.7
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.2e-16 89.0 72 51.4
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 5.5e-16 88.2 74 54.1
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 7.1e-16 87.8 92 47.8
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 9.3e-16 87.4 84 45.2
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 1.2e-15 87.0 87 55.2
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 1.2e-15 87.0 87 55.2
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 1.6e-15 86.7 76 55.3
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 1.6e-15 86.7 148 37.8
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 1.6e-15 86.7 60 56.7
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 1.6e-15 86.7 65 55.4
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 2.1e-15 86.3 70 54.3
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 3.5e-15 85.5 92 48.9
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 1.3e-14 83.6 73 52.1
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-14 83.2 72 54.2
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 2.3e-14 82.8 89 47.2
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 2.3e-14 82.8 89 47.2
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 2.3e-14 82.8 89 47.2
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 2.3e-14 82.8 89 47.2
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 3.0e-14 82.4 74 50.0
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 3.9e-14 82.0 72 55.6
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 6.7e-14 81.3 77 48.1
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.5e-13 80.1 91 46.2
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.5e-13 80.1 91 46.2
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.5e-13 80.1 91 46.2
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 5.7e-13 78.2 85 48.2
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 5.7e-13 78.2 88 44.3
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 1.3e-12 77.0 90 48.9
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.3e-12 77.0 76 50.0
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 1.6e-12 76.6 87 44.8
Lj5g0017481 Lotus japonicus HOM05D003879 ORTHO05D003858 3.7e-12 75.5 63 60.3
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 1.4e-11 73.6 96 43.8
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 1.8e-11 73.2 85 43.5
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.1e-11 72.4 72 44.4
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 9.0e-11 70.9 62 45.2
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 2.2e-09 66.2 69 46.4
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.8e-09 65.5 71 45.1
BcaB03g13129 Brassica carinata HOM05D015260 ORTHO05D003858 3.8e-09 65.5 57 49.1
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 1.4e-08 63.5 54 50.0
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 1.4e-08 63.5 59 47.5
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 2.5e-08 62.8 57 45.6
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 2.5e-08 62.8 87 37.9
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.5e-08 62.8 87 37.9
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.5e-08 62.8 87 37.9
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.2e-08 62.4 75 38.7
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 9.3e-08 60.8 57 45.6
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 9.3e-08 60.8 57 45.6
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 1.2e-07 60.5 74 40.5
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 1.6e-07 60.1 65 40.0
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 2.1e-07 59.7 55 43.6
Carub.0008s1815 Capsella rubella HOM05D003879 ORTHO05D003858 2.7e-07 59.3 73 39.7
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 4.6e-07 58.5 62 45.2
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 4.6e-07 58.5 69 36.2
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 6.1e-07 58.2 68 38.2
A09p52500 Brassica napus HOM05D003879 ORTHO05D003858 1.0e-06 57.4 72 43.1
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 1.3e-06 57.0 69 34.8
AL1G30600 Arabidopsis lyrata HOM05D013370 ORTHO05D016580 1.8e-06 56.6 69 40.6
C08p16290 Brassica napus HOM05D015260 ORTHO05D003858 3.0e-06 55.8 69 34.8
BolC8t49252H Brassica oleracea HOM05D015260 ORTHO05D003858 3.0e-06 55.8 69 34.8
Mapoly0074s0048 Marchantia polymorpha HOM05D003879 ORTHO05D003858 3.9e-06 55.5 61 41.0
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 5.1e-06 55.1 58 48.3
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 8.7e-06 54.3 62 38.7


User provided reference genes

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