Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08641_v3 Cicer arietinum L. HOM05D005044 ORTHO05D006799 4.1e-230 801.2 451 100.0
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 7.0e-214 747.3 449 91.5
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 2.0e-205 719.2 447 88.4
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 4.5e-205 718.0 446 88.1
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 2.9e-204 715.3 447 89.3
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 2.5e-203 712.2 449 84.9
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 3.4e-200 701.8 447 83.0
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 9.8e-200 700.3 445 86.3
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 1.4e-198 696.4 449 86.0
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 6.2e-186 654.4 428 81.3
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 8.0e-186 654.1 453 80.6
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 8.3e-183 644.0 458 79.7
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.7e-181 639.0 426 81.9
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 7.8e-181 637.5 433 80.8
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 1.3e-180 636.7 449 80.4
FvH4_2g22590 Fragaria vesca HOM05D005044 ORTHO05D006799 2.3e-180 636.0 428 81.3
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.3e-180 636.0 428 81.3
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 5.0e-180 634.8 425 81.4
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 2.5e-179 632.5 453 75.7
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 3.6e-178 628.6 426 81.0
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 4.4e-176 621.7 455 76.5
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 5.8e-176 621.3 447 78.7
Potri.005G217400 Populus trichocarpa HOM05D005044 ORTHO05D006799 9.9e-176 620.5 414 79.0
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 1.3e-175 620.2 458 77.7
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 6.4e-175 617.8 468 75.4
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 5.4e-174 614.8 414 77.5
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 2.7e-173 612.5 418 79.4
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 6.0e-173 611.3 457 74.8
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 7.8e-173 610.9 450 78.4
Cfa002318 Carpinus fangiana HOM05D005044 ORTHO05D006799 1.3e-172 610.1 458 76.9
Gohir.D11G132200 Gossypium hirsutum HOM05D005044 ORTHO05D006799 3.3e-171 605.5 463 77.3
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 3.3e-171 605.5 467 76.9
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 9.5e-171 604.0 450 76.7
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 1.2e-170 603.6 463 77.3
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 2.1e-170 602.8 450 76.4
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 3.6e-170 602.1 469 75.9
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 3.6e-170 602.1 428 78.5
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 4.7e-170 601.7 452 77.2
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 8.1e-170 600.9 480 75.4
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 1.8e-169 599.7 463 76.9
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 2.4e-169 599.4 451 75.2
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 8.9e-169 597.4 438 75.8
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 8.9e-169 597.4 428 77.8
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 1.2e-168 597.0 451 74.7
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 1.5e-168 596.7 439 75.6
COL.COLO4_06089 Corchorus olitorius HOM05D005044 ORTHO05D006799 5.8e-168 594.7 467 76.4
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.3e-167 593.6 451 73.4
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 1.3e-167 593.6 453 74.0
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 4.1e-166 588.6 454 75.6
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 9.2e-166 587.4 434 74.9
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 1.2e-165 587.0 456 71.7
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 1.6e-165 586.6 477 71.7
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 6.0e-165 584.7 359 82.5
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 1.0e-164 583.9 424 77.8
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 3.0e-164 582.4 426 73.7
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 2.5e-163 579.3 443 71.8
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 9.6e-163 577.4 419 75.9
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 6.2e-162 574.7 451 70.7
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 1.8e-161 573.2 415 76.9
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 6.9e-161 571.2 485 68.2
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 1.2e-160 570.5 463 66.5
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 9.9e-160 567.4 433 73.4
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.9e-159 565.8 464 70.0
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 3.2e-158 562.4 466 65.9
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 4.6e-157 558.5 464 66.6
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 1.3e-156 557.0 464 68.1
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 2.3e-156 556.2 451 69.2
Manes.01G202300 Manihot esculenta HOM05D005044 ORTHO05D006799 2.3e-156 556.2 397 79.6
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 9.6e-155 550.8 465 66.9
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 8.1e-154 547.7 455 68.6
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 3.4e-152 542.3 436 72.9
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 7.6e-152 541.2 501 59.5
Nitab4.5_0004093g0010 Nicotiana tabacum HOM05D005044 ORTHO05D006799 1.9e-150 536.6 389 79.7
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 1.9e-150 536.6 351 78.1
Nitab4.5_0000393g0110 Nicotiana tabacum HOM05D005044 ORTHO05D006799 7.1e-150 534.6 384 79.7
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 1.6e-149 533.5 456 67.1
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 2.3e-148 529.6 438 67.8
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 3.0e-148 529.3 454 71.8
HPP92_024856 Vanilla planifolia HOM05D005044 ORTHO05D006799 5.1e-148 528.5 464 71.6
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 1.1e-147 527.3 456 67.1
AUR62011952 Chenopodium quinoa HOM05D005044 ORTHO05D006799 2.6e-144 516.2 320 80.6
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 4.5e-144 515.4 432 69.4
EL10Ac5g10465 Beta vulgaris HOM05D005044 ORTHO05D006799 5.8e-144 515.0 352 75.3
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 1.7e-143 513.5 320 80.0
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 6.4e-143 511.5 318 78.3
SHI09971 Sapria himalayana HOM05D005044 ORTHO05D006799 1.1e-142 510.8 413 66.8
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 9.3e-142 507.7 428 69.6
Peaxi162Scf01826g00015 Petunia axillaris HOM05D005044 ORTHO05D006799 1.2e-141 507.3 391 74.4
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 1.6e-141 506.9 275 87.6
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 4.3e-139 498.8 428 67.8
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 4.3e-139 498.8 420 62.9
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 3.1e-137 492.7 451 62.1
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 1.5e-136 490.3 442 61.1
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 1.0e-135 487.6 286 81.8
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 4.9e-135 485.3 467 60.4
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 8.4e-135 484.6 467 60.4
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 1.9e-134 483.4 350 69.7
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 3.2e-134 482.6 470 61.5
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 2.7e-133 479.6 512 58.2
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 9.7e-131 471.1 367 68.4
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 2.2e-130 469.9 430 59.5
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 8.2e-130 468.0 430 60.0
A04p05170 Brassica napus HOM05D005044 ORTHO05D006799 2.4e-129 466.5 431 59.6
BraA04t16227Z Brassica rapa HOM05D005044 ORTHO05D006799 3.1e-129 466.1 429 59.9
BcaC02g09052 Brassica carinata HOM05D005044 ORTHO05D006799 1.5e-128 463.8 431 59.4
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 2.2e-127 459.9 349 67.3
BolC4t25361H Brassica oleracea HOM05D005044 ORTHO05D006799 3.8e-127 459.1 431 58.7
C04p37870 Brassica napus HOM05D005044 ORTHO05D006799 1.1e-126 457.6 431 58.9
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 3.2e-126 456.1 396 63.1
CARHR164510 Cardamine hirsuta HOM05D005044 ORTHO05D006799 2.7e-125 453.0 383 69.5
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 8.8e-124 448.0 260 83.1
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 8.5e-119 431.4 308 67.9
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 3.2e-118 429.5 290 69.7
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 7.0e-113 411.8 239 82.0
Oeu018178.1 Olea europaea HOM05D005044 ORTHO05D006799 5.2e-108 395.6 445 55.3
CBR_g46433 Chara braunii HOM05D005044 ORTHO05D006799 2.6e-107 393.3 239 74.1
GSVIVG01000713001 Vitis vinifera HOM05D005044 ORTHO05D006799 1.6e-104 384.0 262 69.1
unitig_22.g5955 Utricularia gibba HOM05D005044 ORTHO05D006799 3.3e-99 366.3 315 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1037 Anthoceros agrestis HOM05D005044 ORTHO05D006799 3.7e-98 362.8 217 77.0
vmacro14878 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 3.0e-84 316.6 210 74.8
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 8.3e-82 308.5 285 51.2
Cre06.g256200 Chlamydomonas reinhardtii HOM05D005044 ORTHO05D006799 1.0e-76 291.6 295 50.8
Sabra02G0036800 Salix brachista HOM05D005044 ORTHO05D006799 2.7e-72 276.9 160 84.4
Sabra02G0036900 Salix brachista HOM05D005044 ORTHO05D006799 3.4e-67 260.0 229 71.2
Cfa021827 Carpinus fangiana HOM05D005044 ORTHO05D006799 8.9e-60 235.3 226 49.1
PRCOL_00003272 Prasinoderma coloniale HOM05D005044 ORTHO05D006799 1.2e-59 235.0 255 46.3
unitig_22.g5954 Utricularia gibba HOM05D005044 ORTHO05D006799 1.2e-53 214.9 134 76.1
vmacro14879 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 1.1e-52 211.8 160 70.6
Haze_26753 Corylus avellana HOM05D005044 ORTHO05D006799 1.4e-44 184.9 232 40.1
FAN07G0333 Fragaria x ananassa HOM05D005044 ORTHO05D020615 1.3e-23 115.2 105 61.0
BraA09t40212Z Brassica rapa HOM05D005044 ORTHO05D006799 4.8e-21 106.7 138 42.0
BolC9t54871H Brassica oleracea HOM05D005044 ORTHO05D006799 1.4e-20 105.1 230 39.6
FAN24G2420 Fragaria x ananassa HOM05D005044 ORTHO05D020615 9.0e-20 102.4 142 46.5
BcaC04g22409 Brassica carinata HOM05D005044 ORTHO05D000065 1.7e-18 98.2 230 38.7
C09p19690 Brassica napus HOM05D005044 ORTHO05D006799 1.1e-17 95.5 229 38.4
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 5.5e-17 93.2 71 64.8
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 6.9e-12 76.3 48 75.0
FvH4_4g08670 Fragaria vesca HOM05D005044 ORTHO05D006799 1.5e-11 75.1 54 64.8
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.5e-09 67.8 175 44.6
Dinv08224 Davidia involucrata HOM05D051781 ORTHO05D178724 2.5e-09 67.8 32 93.8
Ah.11g050050 Amaranthus hybridus HOM05D005044 ORTHO05D060978 2.7e-08 64.3 89 49.4
BcaC03g14692 Brassica carinata HOM05D000313 ORTHO05D000065 5.1e-07 60.1 199 34.2


User provided reference genes

Program Settings