Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.7e-299 1030.8 522 100.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 7.7e-265 916.8 527 88.6
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.8e-261 905.6 526 88.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 1.9e-255 885.6 522 86.2
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.3e-251 872.8 515 87.8
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.9e-248 861.7 510 87.5
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.2e-246 856.3 522 85.2
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.0e-244 849.0 523 84.9
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 4.0e-229 798.1 502 83.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 7.0e-226 787.3 523 78.8
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 3.4e-220 768.5 511 77.9
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 5.6e-215 751.1 530 75.1
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.1e-214 749.2 529 75.0
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.9e-202 709.5 514 71.8
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.4e-202 708.0 519 72.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.4e-202 708.0 519 72.1
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 4.6e-201 704.9 529 71.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.0e-200 703.7 519 71.5
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.3e-200 702.6 514 71.6
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 3.0e-200 702.2 521 71.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 8.1e-198 694.1 515 70.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.4e-194 682.6 516 70.5
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.4e-194 682.6 518 69.5
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.4e-194 682.6 518 69.5
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.1e-194 681.0 521 69.1
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 2.7e-193 679.1 512 68.8
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 6.0e-193 677.9 521 69.5
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.3e-192 676.8 515 69.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.3e-192 676.8 521 68.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.3e-192 676.0 518 69.7
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.0e-192 675.6 502 70.5
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 8.7e-192 674.1 524 69.3
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.5e-191 673.3 502 70.5
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 4.3e-191 671.8 532 68.4
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.3e-191 671.8 502 70.5
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-189 667.2 512 69.3
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.1e-189 665.6 516 68.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.0e-189 665.2 530 67.0
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.4e-188 662.1 522 67.6
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 9.9e-188 660.6 519 68.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.1e-186 657.1 517 66.0
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.1e-185 652.9 519 67.8
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.6e-185 651.7 558 64.5
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.3e-184 649.4 546 64.3
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.0e-184 649.0 510 67.8
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 3.7e-182 642.1 517 65.8
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 8.2e-182 641.0 518 64.9
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.8e-179 632.1 532 64.3
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 8.4e-179 630.9 519 64.4
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.5e-177 625.5 435 73.1
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.0e-176 624.0 536 62.9
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.3e-176 623.6 353 88.4
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 6.7e-176 621.3 504 65.1
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 3.6e-169 599.0 511 62.6
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.8e-168 596.7 512 64.5
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 9.7e-167 590.9 515 62.1
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.1e-165 587.4 558 60.8
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.4e-165 586.3 508 60.8
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.4e-165 586.3 567 58.0
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 9.1e-165 584.3 522 62.5
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 7.7e-164 581.3 515 62.5
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.3e-163 580.5 503 61.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-163 577.8 501 61.1
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.5e-162 576.2 477 62.7
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.5e-159 567.0 511 59.7
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.5e-156 557.0 485 61.4
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.7e-155 553.5 528 58.5
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.8e-155 552.4 484 61.4
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 5.7e-151 538.5 415 67.7
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.8e-149 533.5 506 58.1
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 4.7e-145 518.8 519 56.1
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.1e-141 507.7 406 65.0
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 3.1e-141 506.1 431 63.3
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.6e-140 503.8 485 56.9
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.0e-140 503.4 495 55.8
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.0e-136 491.1 443 57.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.3e-131 474.2 542 51.8
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 5.5e-130 468.8 398 63.8
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.9e-128 461.5 342 69.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.2e-126 456.8 345 68.4
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 8.3e-126 454.9 489 51.3
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 9.5e-122 441.4 500 52.4
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.0e-95 354.0 423 52.5
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 7.8e-92 342.0 482 45.4
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 7.8e-92 342.0 447 46.1
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 9.6e-74 282.0 458 38.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-73 281.6 454 38.5
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.8e-73 280.4 476 38.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 2.6e-71 273.9 436 39.4
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 5.8e-71 272.7 458 38.2
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.6e-71 272.3 478 37.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.0e-70 271.9 464 39.9
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.7e-70 271.2 463 37.8
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-70 270.8 485 38.6
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.5e-70 269.2 449 38.1
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.9e-69 267.7 510 37.5
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 7.1e-69 265.8 458 37.6
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.7e-68 263.8 475 37.5
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.9e-68 262.3 448 38.2
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.9e-68 262.3 270 55.6
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.3e-67 261.5 194 70.6
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.0e-67 260.4 448 38.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.5e-66 258.1 437 38.0
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 3.3e-66 256.9 447 37.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.3e-65 255.0 396 40.9
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.6e-63 245.7 383 40.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.9e-62 243.8 450 38.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 8.4e-62 242.3 410 39.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-61 241.5 439 36.4
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.9e-61 241.1 439 36.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.5e-61 240.7 489 35.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-61 240.4 410 39.0
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-61 240.4 439 36.7
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.1e-61 239.2 402 38.3
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 9.3e-61 238.8 400 38.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.6e-60 238.0 454 36.1
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.1e-60 237.7 400 38.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.7e-60 237.3 444 37.6
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-59 235.0 409 39.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 8.7e-59 232.3 433 36.5
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.1e-58 231.9 437 37.5
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 4.1e-56 223.4 421 37.5
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 5.0e-54 216.5 408 36.3
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 5.5e-53 213.0 483 34.0
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.7e-52 210.7 371 36.4
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 4.6e-52 209.9 382 34.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-51 208.8 401 37.4
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-51 208.4 437 33.9
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 5.7e-50 203.0 159 67.9
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.2e-49 199.1 411 35.0
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.7e-44 184.1 150 60.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.6e-44 183.7 414 33.1
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-42 177.2 419 31.7
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 3.1e-40 170.6 92 89.1
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-39 168.3 275 38.2
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-37 162.2 264 39.8
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-36 158.7 391 32.2
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.8e-33 147.5 213 44.1
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.2e-33 146.0 238 37.8
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-31 142.1 108 62.0
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 2.0e-31 141.4 190 46.3
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.0e-31 141.4 280 36.4
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.5e-29 135.2 78 89.7
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 6.1e-28 129.8 183 47.0
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.6e-26 124.4 271 34.7
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.0e-22 112.5 207 35.3
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.0e-22 112.5 145 47.6
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.3e-22 112.1 177 39.0
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-22 112.1 173 42.8
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 6.5e-22 109.8 58 93.1
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.1e-20 104.8 80 73.8
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 8.0e-20 102.8 143 44.1
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 8.0e-20 102.8 155 40.6
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.2e-19 100.1 109 50.5
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 5.2e-19 100.1 311 30.9
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.3e-17 95.5 144 41.7
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.3e-17 93.2 132 37.9
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 9.1e-16 89.4 65 61.5
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.5e-15 87.4 61 63.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 5.9e-15 86.7 146 43.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 5.9e-15 86.7 301 26.6
Ca_23751_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 1.3e-14 85.5 53 83.0
Ca_27492_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 1.3e-14 85.5 53 83.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.7e-14 85.1 382 26.2
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 3.3e-13 80.9 56 67.9
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-13 80.9 59 64.4
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.2e-12 79.0 100 41.0
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 2.1e-12 78.2 327 25.4
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 8.0e-12 76.3 177 35.6
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.0e-11 75.9 115 39.1
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.8e-11 75.1 80 50.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.2e-11 73.6 209 30.1
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 8.9e-11 72.8 60 60.0
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.2e-10 72.4 79 51.9
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.0e-10 71.6 81 49.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 2.6e-10 71.2 125 37.6
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 3.4e-10 70.9 172 34.9
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 2.2e-09 68.2 54 68.5
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 2.2e-09 68.2 82 47.6
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 3.7e-09 67.4 178 25.3
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 7.0e-08 63.2 104 43.3
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 1.7e-06 58.5 124 29.8
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.9e-06 57.4 44 61.4
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.6e-06 56.6 83 42.2


User provided reference genes

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