Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 1.5e-36 155.6 73 100.0
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 3.3e-20 101.3 73 69.9
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 1.2e-19 99.4 75 66.7
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 1.2e-19 99.4 76 65.8
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.4e-18 95.9 73 71.2
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.8e-18 95.5 73 64.4
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 4.4e-17 90.9 74 63.5
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.4e-15 85.9 73 61.6
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 2.9e-13 78.2 51 74.5
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.2e-11 72.8 62 59.7
Lalb_Chr25g0282791 Lupinus albus HOM05D003654 ORTHO05D004176 1.2e-11 72.8 56 62.5
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 3.6e-11 71.2 58 58.6
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.6e-11 71.2 86 43.0
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.2e-10 67.4 49 61.2
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 5.2e-10 67.4 85 42.4
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 6.8e-10 67.0 52 59.6
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.8e-10 67.0 72 45.8
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.2e-09 66.2 75 46.7
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.2e-09 66.2 83 45.8
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.2e-09 66.2 72 45.8
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.5e-09 65.9 53 60.4
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.5e-09 65.9 53 60.4
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.5e-09 65.9 53 60.4
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.5e-09 65.9 53 60.4
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.5e-09 65.9 53 60.4
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.0e-09 65.5 52 57.7
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.0e-09 65.5 75 48.0
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 2.0e-09 65.5 75 54.7
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.6e-09 65.1 64 53.1
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.6e-09 65.1 53 58.5
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.6e-09 65.1 56 55.4
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.4e-09 64.7 42 64.3
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.4e-09 64.7 73 46.6
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.4e-09 64.7 72 44.4
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 3.4e-09 64.7 44 68.2
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.4e-09 64.3 32 84.4
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 4.4e-09 64.3 44 63.6
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.4e-09 64.3 53 56.6
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.4e-09 64.3 56 55.4
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.4e-09 64.3 53 56.6
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 4.4e-09 64.3 80 46.2
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.8e-09 63.9 86 45.3
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 7.5e-09 63.5 73 43.8
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.5e-09 63.5 87 46.0
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 9.8e-09 63.2 33 78.8
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.8e-09 63.2 44 61.4
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.3e-08 62.8 50 64.0
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-08 62.8 54 57.4
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.3e-08 62.8 54 57.4
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.3e-08 62.8 54 57.4
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.3e-08 62.8 53 56.6
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.3e-08 62.8 44 61.4
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.3e-08 62.8 50 60.0
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.3e-08 62.8 39 66.7
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.3e-08 62.8 45 62.2
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.3e-08 62.8 45 62.2
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-08 62.8 67 47.8
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.3e-08 62.8 73 43.8
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.3e-08 62.8 73 43.8
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.3e-08 62.8 83 47.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.3e-08 62.8 48 62.5
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.3e-08 62.8 48 62.5
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.7e-08 62.4 48 60.4
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.7e-08 62.4 53 54.7
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.7e-08 62.4 40 67.5
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.7e-08 62.4 33 78.8
Lalb_Chr25g0282781 Lupinus albus HOM05D003654 ORTHO05D004176 1.7e-08 62.4 34 79.4
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.7e-08 62.4 42 59.5
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.7e-08 62.4 33 75.8
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.7e-08 62.4 32 78.1
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.7e-08 62.4 47 63.8
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 2.2e-08 62.0 77 42.9
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.2e-08 62.0 43 55.8
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 2.2e-08 62.0 64 51.6
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.2e-08 62.0 48 60.4
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 2.2e-08 62.0 33 75.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.9e-08 61.6 72 45.8
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 2.9e-08 61.6 54 59.3
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.9e-08 61.6 33 75.8
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.9e-08 61.6 73 42.5
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 2.9e-08 61.6 65 50.8
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.9e-08 61.6 38 63.2
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.7e-08 61.2 52 55.8
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 3.7e-08 61.2 80 45.0
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 3.7e-08 61.2 37 64.9
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.9e-08 60.8 41 63.4
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 6.4e-08 60.5 74 48.6
Medtr3g032740 Medicago truncatula HOM05D003654 ORTHO05D004176 6.4e-08 60.5 73 49.3
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.4e-08 60.5 39 69.2
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 8.3e-08 60.1 83 42.2
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 8.3e-08 60.1 52 55.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 8.3e-08 60.1 52 55.8
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 1.1e-07 59.7 83 42.2
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.4e-07 59.3 32 75.0
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.4e-07 59.3 67 47.8
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.4e-07 59.3 67 47.8
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.9e-07 58.9 52 53.8
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.9e-07 58.9 42 57.1
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.9e-07 58.9 30 83.3
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.9e-07 58.9 33 69.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.9e-07 58.9 38 63.2
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 2.4e-07 58.5 84 40.5
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 2.4e-07 58.5 50 52.0
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.4e-07 58.5 32 75.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.4e-07 58.5 87 42.5
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 2.4e-07 58.5 63 44.4
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 2.4e-07 58.5 80 41.2
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.2e-07 58.2 58 53.4
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.2e-07 58.2 41 63.4
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.1e-07 57.8 33 66.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 5.4e-07 57.4 58 48.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 5.4e-07 57.4 74 44.6
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 5.4e-07 57.4 43 58.1
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 5.4e-07 57.4 59 45.8
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 5.4e-07 57.4 66 47.0
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 7.0e-07 57.0 33 69.7
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 7.0e-07 57.0 70 38.6
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 7.0e-07 57.0 88 38.6
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 1.2e-06 56.2 76 44.7
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.2e-06 56.2 71 43.7
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.2e-06 56.2 71 43.7
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 1.2e-06 56.2 74 41.9
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 1.6e-06 55.8 66 48.5
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.6e-06 55.8 65 43.1
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.0e-06 55.5 32 68.8
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 2.0e-06 55.5 86 38.4
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.7e-06 55.1 47 59.6
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.7e-06 55.1 33 63.6
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 2.7e-06 55.1 33 66.7
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.5e-06 54.7 38 60.5
FAN01G0848 Fragaria x ananassa HOM05D021847 ORTHO05D025587 3.5e-06 54.7 28 75.0
FAN03G3154 Fragaria x ananassa HOM05D021847 ORTHO05D025587 3.5e-06 54.7 28 75.0
FAN06G2251 Fragaria x ananassa HOM05D021847 ORTHO05D025587 3.5e-06 54.7 28 75.0
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 3.5e-06 54.7 85 42.4
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 4.6e-06 54.3 31 71.0
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 4.6e-06 54.3 86 40.7
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.6e-06 54.3 63 47.6
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 7.8e-06 53.5 58 48.3
RcHm_v2.0_Chr1g0317121 Rosa chinensis HOM05D021847 ORTHO05D025587 7.8e-06 53.5 27 77.8
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 7.8e-06 53.5 59 49.2


User provided reference genes

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