Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 5.8e-169 597.4 293 100.0
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 1.5e-124 449.9 286 81.8
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 8.2e-123 444.1 286 79.0
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 8.5e-120 434.1 276 77.9
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 1.8e-117 426.4 279 78.1
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 1.4e-114 416.8 276 76.8
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 6.5e-112 407.9 261 76.6
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 7.2e-111 404.4 267 75.7
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 2.7e-110 402.5 288 73.3
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 3.7e-107 392.1 240 80.8
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 7.0e-106 387.9 261 73.6
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 6.5e-104 381.3 258 73.6
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 8.5e-104 380.9 250 74.4
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 1.1e-103 380.6 254 73.6
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 1.1e-103 380.6 279 69.9
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 1.1e-103 380.6 279 69.9
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 1.5e-103 380.2 293 66.9
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 5.5e-103 378.3 262 72.1
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 7.2e-103 377.9 262 72.1
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 9.4e-103 377.5 230 77.8
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 2.1e-102 376.3 255 71.8
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 2.7e-102 375.9 219 79.5
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 3.6e-102 375.6 249 71.9
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 3.6e-102 375.6 198 86.4
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 6.1e-102 374.8 212 83.5
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 6.1e-102 374.8 259 73.4
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 1.0e-101 374.0 248 73.8
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 3.0e-101 372.5 247 73.7
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 3.0e-101 372.5 216 81.5
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 2.0e-100 369.8 256 70.7
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 2.6e-100 369.4 250 72.8
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 4.4e-100 368.6 246 73.2
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 4.4e-100 368.6 253 71.1
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 7.5e-100 367.9 194 87.6
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 9.8e-100 367.5 266 69.2
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 1.3e-99 367.1 245 71.4
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.3e-99 367.1 259 71.8
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 2.8e-99 365.9 260 70.8
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 3.7e-99 365.5 194 85.6
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 6.3e-99 364.8 238 75.6
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 6.3e-99 364.8 273 67.4
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 1.1e-98 364.0 281 65.8
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 1.1e-98 364.0 257 67.7
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 1.4e-98 363.6 194 88.1
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 2.4e-98 362.8 238 74.4
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 3.1e-98 362.5 244 74.6
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 5.4e-98 361.7 244 74.6
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 7.0e-98 361.3 247 72.5
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 9.1e-98 360.9 196 84.2
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 9.1e-98 360.9 244 74.6
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 2.0e-97 359.8 253 70.4
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 3.5e-97 359.0 274 64.6
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 7.7e-97 357.8 223 75.8
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 1.0e-96 357.5 211 79.1
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 1.0e-96 357.5 252 70.6
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 1.0e-96 357.5 261 67.4
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 1.3e-96 357.1 252 71.4
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 1.7e-96 356.7 253 69.2
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 3.8e-96 355.5 249 69.9
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 3.8e-96 355.5 252 69.4
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 6.6e-96 354.8 252 69.0
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 1.1e-95 354.0 255 66.3
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 1.9e-95 353.2 195 83.1
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 1.9e-95 353.2 255 69.0
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 3.3e-95 352.4 249 67.1
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 9.5e-95 350.9 247 69.2
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 1.2e-94 350.5 241 71.0
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 1.2e-94 350.5 194 85.6
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 1.4e-93 347.1 251 68.5
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 3.0e-93 345.9 242 70.7
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 3.0e-93 345.9 242 70.7
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 2.0e-92 343.2 272 65.1
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 9.8e-92 340.9 227 70.9
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 2.8e-91 339.3 196 79.6
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 3.7e-91 339.0 189 79.9
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 6.3e-91 338.2 265 65.7
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 1.8e-90 336.7 277 62.8
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 7.0e-90 334.7 255 65.1
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 7.0e-90 334.7 244 66.4
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 9.2e-90 334.3 251 65.7
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 2.3e-88 329.7 169 89.3
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 1.1e-87 327.4 199 72.9
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 6.1e-86 321.6 245 65.3
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 6.1e-86 321.6 193 75.1
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 4.0e-85 318.9 281 61.6
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 2.0e-81 306.6 280 53.9
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 4.6e-81 305.4 236 65.3
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 6.0e-81 305.1 252 61.5
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 1.5e-79 300.4 240 59.6
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 1.6e-78 297.0 175 76.6
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 4.7e-78 295.4 165 80.0
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 3.1e-77 292.7 363 47.1
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 5.8e-76 288.5 175 82.9
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-76 287.7 190 67.9
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 1.9e-74 283.5 278 56.5
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 4.1e-74 282.3 207 71.0
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 7.0e-74 281.6 235 66.0
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 3.5e-73 279.3 163 76.7
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 3.0e-72 276.2 211 64.9
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 6.8e-61 238.4 171 70.8
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 1.5e-55 220.7 121 81.0
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 1.8e-53 213.8 199 56.3
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.8e-51 206.1 121 76.0
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 5.1e-48 195.7 275 42.2
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 5.1e-48 195.7 119 79.8
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 6.2e-46 188.7 163 65.0
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 5.8e-44 182.2 484 31.6
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 7.6e-44 181.8 104 79.8
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 8.7e-40 168.3 91 83.5
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 5.8e-36 155.6 215 45.6
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 1.6e-33 147.5 73 87.7
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 8.2e-30 135.2 80 75.0
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 1.7e-27 127.5 72 73.6
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 1.8e-16 90.9 95 51.6
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-07 61.2 33 87.9


User provided reference genes

Program Settings