Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.7e-257 892.1 434 100.0
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 2.9e-241 838.2 432 94.0
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.6e-236 822.4 433 91.2
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 3.4e-234 814.7 432 89.8
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 3.8e-233 811.2 432 89.4
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 2.3e-230 802.0 434 88.7
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 3.9e-230 801.2 416 92.5
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 5.1e-230 800.8 428 88.6
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 4.3e-229 797.7 428 88.3
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.1e-223 778.9 431 85.8
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 3.9e-222 774.6 438 82.9
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.8e-220 768.5 430 84.0
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 4.2e-216 754.6 430 82.3
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.2e-215 753.1 430 81.6
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.6e-215 752.7 430 82.3
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 2.7e-215 751.9 430 81.6
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 2.7e-215 751.9 429 82.1
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 4.7e-215 751.1 432 83.1
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.8e-214 749.2 430 81.9
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 9.7e-213 743.4 429 80.9
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 6.3e-212 740.7 430 79.5
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.1e-211 740.0 429 80.2
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.4e-211 739.6 430 80.5
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 1.8e-211 739.2 454 78.9
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.4e-211 738.8 430 80.9
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 3.1e-211 738.4 430 79.3
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 3.1e-211 738.4 430 80.5
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 5.3e-211 737.6 430 79.3
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 2.6e-210 735.3 430 79.8
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 3.5e-210 734.9 427 80.6
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.0e-209 733.4 430 79.5
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.3e-209 733.0 428 79.9
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 3.8e-209 731.5 430 79.5
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 8.5e-209 730.3 430 79.1
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 3.2e-208 728.4 430 79.1
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 4.2e-208 728.0 427 80.3
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.2e-208 728.0 430 79.3
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.2e-207 726.5 432 78.2
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 4.7e-207 724.5 430 78.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.4e-206 723.0 427 79.6
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 3.9e-206 721.5 449 76.2
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 6.7e-206 720.7 430 78.6
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 8.8e-206 720.3 429 79.0
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 7.4e-205 717.2 429 78.1
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 9.7e-205 716.8 412 81.8
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 2.2e-204 715.7 425 79.3
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 4.8e-204 714.5 429 77.9
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 1.4e-203 713.0 428 79.0
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 4.1e-203 711.4 429 77.4
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 4.1e-203 711.4 430 77.0
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 9.1e-203 710.3 427 79.4
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 9.1e-203 710.3 428 76.6
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.2e-202 709.9 430 76.0
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.2e-202 709.9 429 76.7
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.6e-202 709.5 428 77.1
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.0e-201 706.8 428 76.2
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 2.9e-201 705.3 430 76.7
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 3.8e-201 704.9 427 76.8
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.5e-201 704.1 439 75.6
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.1e-200 703.4 430 76.3
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.6e-199 699.5 429 75.8
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 3.6e-199 698.4 418 78.7
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 4.7e-199 698.0 430 76.5
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 8.0e-199 697.2 428 76.2
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.0e-198 696.8 428 75.2
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.8e-198 696.0 413 79.4
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 2.3e-198 695.7 428 75.9
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 5.2e-198 694.5 429 76.0
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 6.7e-198 694.1 437 74.1
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 6.7e-198 694.1 427 75.6
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.0e-197 692.6 429 76.2
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 2.0e-197 692.6 394 81.2
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 4.4e-197 691.4 430 74.2
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 5.7e-197 691.0 428 75.5
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.3e-196 689.9 427 75.4
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 6.3e-196 687.6 419 76.8
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.4e-195 686.4 429 75.3
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 2.4e-195 685.6 428 75.5
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 3.1e-195 685.3 413 78.7
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 9.1e-195 683.7 406 78.6
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 8.5e-193 677.2 412 76.7
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-192 676.8 455 71.6
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.5e-192 675.6 415 76.4
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.0e-190 670.2 446 73.3
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.0e-190 670.2 439 73.3
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 3.5e-186 655.2 412 75.2
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.0e-185 653.7 473 68.3
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.8e-185 651.7 429 70.9
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 5.5e-184 647.9 429 71.3
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 9.5e-184 647.1 484 67.6
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.0e-178 629.4 429 68.1
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 7.8e-178 627.5 439 69.9
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 2.3e-177 625.9 389 75.6
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 4.3e-176 621.7 429 67.1
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.1e-168 597.0 474 60.8
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.5e-168 596.7 540 58.1
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 9.5e-168 594.0 385 72.7
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 3.1e-166 589.0 422 70.4
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.5e-165 586.6 356 78.1
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 3.4e-165 585.5 412 69.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 3.7e-164 582.0 365 78.1
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 9.2e-163 577.4 375 70.9
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 6.8e-158 561.2 430 64.2
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 2.2e-156 556.2 427 59.3
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.3e-152 542.0 430 62.3
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 9.5e-152 540.8 430 59.5
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 5.2e-150 535.0 455 59.3
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.2e-147 525.8 427 57.4
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 3.9e-145 518.8 453 56.1
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.1e-142 509.2 413 61.0
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.8e-140 502.3 435 55.6
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 1.9e-131 473.4 436 53.0
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.0e-125 453.4 270 77.8
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 5.1e-121 438.7 399 53.6
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.7e-116 423.7 246 78.0
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 8.2e-103 378.3 235 77.9
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.1e-99 367.9 195 84.1
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 2.1e-98 363.6 448 44.0
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 6.1e-98 362.1 196 82.1
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.4e-97 360.9 367 46.0
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 3.3e-96 356.3 503 39.6
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 2.2e-95 353.6 280 62.5
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 8.8e-89 331.6 235 70.2
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.8e-62 244.2 157 73.9
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.7e-60 237.7 197 61.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.3e-57 227.3 171 62.6
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 4.3e-51 206.5 189 56.1
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.8e-49 201.1 242 45.5
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.2e-45 188.3 424 32.5
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.9e-43 181.0 145 60.0
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 7.3e-43 179.1 183 51.9
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 9.5e-43 178.7 187 49.2
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.2e-42 178.3 91 81.3
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.8e-41 174.5 103 70.9
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.9e-39 166.4 132 57.6
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 8.9e-33 145.6 145 51.7
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 2.6e-32 144.1 88 71.6
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 4.4e-32 143.3 86 72.1
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 2.2e-31 141.0 125 56.8
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 6.0e-29 132.9 106 63.2
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.1e-26 124.4 122 52.5
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.1e-22 112.1 126 47.6
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.2e-21 108.6 98 54.1
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.6e-18 98.2 67 73.1
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 8.1e-18 95.9 58 72.4
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.0e-12 79.0 65 63.1
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.3e-12 77.8 71 52.1
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.1e-09 68.9 45 66.7
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.2e-08 65.5 51 60.8
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.5e-08 65.1 72 47.2
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.5e-08 65.1 72 47.2
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 2.0e-08 64.7 82 43.9
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 3.4e-08 63.9 70 47.1
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 8.4e-07 59.3 40 65.0


User provided reference genes

Program Settings