Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.0e-139 497.3 250 100.0
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 6.6e-89 331.3 254 72.0
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.3e-81 307.0 260 67.3
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 5.6e-80 301.6 252 66.7
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.5e-72 276.2 256 60.9
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 6.9e-70 268.1 253 62.8
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 9.0e-70 267.7 253 61.7
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.4e-67 259.6 252 61.5
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.2e-60 236.5 216 63.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 3.2e-43 179.5 246 49.6
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 4.6e-42 175.6 261 46.7
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.3e-41 173.3 246 48.0
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.0e-40 170.2 259 45.6
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 3.7e-39 166.0 250 43.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 8.2e-39 164.9 247 46.6
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.4e-38 164.1 253 44.7
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.8e-38 163.7 257 44.7
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.4e-37 159.5 259 44.8
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.7e-36 157.1 252 44.8
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 8.5e-36 154.8 246 45.1
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 3.2e-35 152.9 258 42.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 4.2e-35 152.5 225 44.0
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.6e-34 150.6 250 43.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.7e-34 149.8 240 42.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.0e-33 147.9 253 40.3
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-33 147.1 256 42.2
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.0e-33 146.4 262 41.2
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.5e-32 144.1 251 41.0
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.0e-32 143.7 262 40.8
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.6e-32 143.3 265 40.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.3e-31 141.0 215 44.2
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.7e-31 140.6 244 41.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.2e-31 140.2 260 38.1
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.8e-31 139.8 233 43.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 8.2e-31 138.3 258 41.9
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.4e-30 137.5 253 38.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.4e-30 136.7 249 39.0
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.4e-30 136.7 246 39.0
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.4e-30 136.7 246 39.0
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.4e-30 136.7 252 40.1
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 3.1e-30 136.3 258 38.4
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 4.1e-30 136.0 247 41.3
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 4.1e-30 136.0 253 40.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.3e-30 135.6 254 38.6
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.0e-30 135.2 252 39.7
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 7.0e-30 135.2 268 38.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 9.1e-30 134.8 256 40.6
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.1e-30 134.8 251 37.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.2e-29 134.4 230 41.3
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-29 134.0 253 37.9
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.6e-29 134.0 248 39.1
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.0e-29 133.7 247 38.1
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.0e-29 133.7 257 37.4
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.6e-29 133.3 258 36.4
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 3.5e-29 132.9 252 39.3
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 4.5e-29 132.5 259 39.4
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 4.5e-29 132.5 257 37.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 4.5e-29 132.5 261 39.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 4.5e-29 132.5 261 39.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 5.9e-29 132.1 254 37.8
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.9e-29 132.1 219 41.6
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.0e-28 131.3 255 37.6
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-28 131.0 250 38.4
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.7e-28 130.6 265 39.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-28 130.6 254 37.4
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.9e-28 129.8 250 40.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 2.9e-28 129.8 205 42.0
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.9e-28 129.8 258 38.4
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 5.0e-28 129.0 251 37.5
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 8.5e-28 128.3 257 37.0
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.5e-28 128.3 258 36.0
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 8.5e-28 128.3 249 39.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.5e-28 128.3 262 35.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.5e-27 127.5 263 36.1
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.5e-27 126.7 257 37.4
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 3.2e-27 126.3 215 40.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.2e-27 126.3 259 35.1
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 5.5e-27 125.6 255 35.3
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 5.5e-27 125.6 254 37.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.2e-26 124.4 251 38.6
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 2.1e-26 123.6 265 36.6
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 6.1e-26 122.1 259 38.2
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-26 122.1 248 38.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 6.1e-26 122.1 251 36.3
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 6.1e-26 122.1 254 36.6
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 8.0e-26 121.7 248 35.1
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.0e-25 121.3 210 39.0
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.0e-25 121.3 243 35.4
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.0e-25 121.3 243 35.4
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.4e-25 120.9 259 36.3
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-25 120.9 243 35.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.4e-25 120.9 269 35.7
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.8e-25 120.6 252 36.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.8e-25 120.6 244 40.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.3e-25 120.2 254 33.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.0e-25 119.8 205 38.5
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.0e-25 119.8 237 36.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.0e-25 119.8 255 36.5
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 4.0e-25 119.4 261 36.0
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 5.2e-25 119.0 205 42.0
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.2e-25 119.0 214 39.3
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 6.7e-25 118.6 256 38.3
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 8.8e-25 118.2 204 42.2
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.5e-24 117.5 206 40.3
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.0e-24 117.1 226 36.7
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 4.4e-24 115.9 210 37.6
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.7e-24 115.5 213 39.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 7.5e-24 115.2 244 35.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.2e-23 113.6 95 58.9
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 2.2e-23 113.6 217 37.8
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 2.8e-23 113.2 230 37.4
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 3.7e-23 112.8 226 38.1
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.3e-23 112.1 255 34.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.3e-23 112.1 255 34.5
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-22 111.3 281 35.9
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.1e-22 111.3 255 35.3
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.1e-22 111.3 204 36.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.4e-22 110.9 239 35.6
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.4e-22 110.2 259 37.5
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 2.4e-22 110.2 238 36.6
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.4e-22 110.2 252 34.9
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.4e-22 110.2 259 36.3
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 3.1e-22 109.8 256 34.0
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 4.1e-22 109.4 216 36.6
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 5.3e-22 109.0 257 37.0
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 7.0e-22 108.6 249 36.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 9.1e-22 108.2 250 37.6
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 9.1e-22 108.2 250 37.6
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 9.1e-22 108.2 250 35.2
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-21 107.8 250 37.2
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.2e-21 107.8 250 36.4
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.2e-21 107.8 258 36.8
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.6e-21 107.5 248 35.5
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.6e-21 107.5 248 36.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.5e-21 106.3 259 34.7
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 4.5e-21 105.9 250 37.6
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 4.5e-21 105.9 250 37.6
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 5.9e-21 105.5 253 36.8
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.0e-20 104.8 209 37.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.8e-20 102.8 252 35.7
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.8e-20 102.8 252 35.7
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.1e-19 101.3 241 34.0
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.9e-19 100.5 208 34.1
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 4.2e-19 99.4 212 34.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 5.5e-19 99.0 245 36.7
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 5.5e-19 99.0 245 36.7
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.1e-18 97.1 220 33.6
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.7e-18 96.7 254 30.7
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.7e-18 96.7 203 35.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.0e-17 94.7 267 31.1
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-17 94.0 245 35.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.0e-17 93.2 246 32.1
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 6.5e-12 75.5 280 26.1
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.5e-11 73.6 72 48.6
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.5e-11 73.6 72 48.6
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.5e-11 72.4 108 37.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 4.4e-08 62.8 49 57.1
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.5e-08 62.0 248 27.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.7e-07 59.7 119 37.0


User provided reference genes

Program Settings