Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.6e-102 375.6 211 100.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 5.5e-52 208.4 196 67.3
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.5e-49 200.3 195 66.7
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.2e-45 186.4 212 57.5
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 6.5e-45 184.9 221 58.8
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 5.5e-44 181.8 196 59.2
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 9.7e-41 171.0 193 58.0
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.8e-39 166.8 203 53.2
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 4.1e-39 165.6 195 55.4
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.0e-37 158.7 209 52.6
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.5e-36 156.4 212 49.1
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 4.2e-36 155.6 209 48.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 4.2e-36 155.6 197 57.4
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 5.5e-36 155.2 186 52.7
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 5.5e-36 155.2 196 54.1
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-35 153.7 193 57.5
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 2.7e-35 152.9 210 51.4
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 4.6e-35 152.1 188 52.7
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.3e-34 149.8 215 47.4
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.1e-34 148.7 226 46.5
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 7.4e-33 144.8 188 52.7
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 7.4e-33 144.8 195 51.3
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.3e-32 144.1 195 48.2
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.3e-32 144.1 189 48.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.7e-32 143.7 195 54.9
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 3.7e-32 142.5 197 48.7
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 6.3e-32 141.7 193 53.4
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.1e-31 141.0 198 47.0
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.4e-31 140.6 216 44.4
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 2.4e-31 139.8 196 50.0
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 4.1e-31 139.0 207 52.2
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 6.9e-31 138.3 213 48.4
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 6.9e-31 138.3 184 50.0
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 9.1e-31 137.9 194 47.9
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 9.1e-31 137.9 196 51.0
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 9.1e-31 137.9 196 50.5
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.0e-30 136.7 196 51.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.6e-30 136.3 183 48.6
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.6e-30 136.3 186 50.0
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.5e-30 135.6 202 45.5
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.5e-30 135.6 207 46.4
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 4.5e-30 135.6 197 48.2
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 5.9e-30 135.2 177 51.4
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.7e-30 134.8 210 46.7
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.7e-30 134.8 201 48.8
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.0e-29 134.4 200 50.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.7e-29 133.7 186 48.9
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.2e-29 133.3 196 49.0
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 3.8e-29 132.5 207 46.9
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 5.0e-29 132.1 212 45.3
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 5.0e-29 132.1 173 52.6
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.0e-29 132.1 182 51.1
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.5e-29 131.7 191 50.3
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 8.5e-29 131.3 204 48.5
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 1.4e-28 130.6 205 50.7
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.4e-28 130.6 182 51.1
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.4e-28 130.6 151 51.7
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.9e-28 130.2 194 52.6
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.5e-28 129.8 197 48.2
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.2e-28 129.4 201 45.8
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 4.2e-28 129.0 190 47.4
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 4.2e-28 129.0 205 47.8
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 5.5e-28 128.6 179 49.7
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 5.5e-28 128.6 198 43.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 9.4e-28 127.9 197 49.2
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 9.4e-28 127.9 204 44.1
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.2e-27 127.5 138 61.6
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.1e-27 126.7 201 49.8
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 3.6e-27 125.9 178 51.7
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 3.6e-27 125.9 156 51.3
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 3.6e-27 125.9 195 45.1
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 7.9e-27 124.8 180 52.2
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.0e-26 124.4 219 47.0
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.0e-26 124.4 196 50.0
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.4e-26 124.0 206 44.7
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.4e-26 124.0 198 46.5
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.8e-26 123.6 199 49.2
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.0e-26 122.9 205 44.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.9e-26 122.5 148 54.7
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.9e-26 122.5 213 44.1
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 3.9e-26 122.5 192 47.4
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.1e-25 120.9 213 44.1
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.1e-25 120.9 213 43.7
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.5e-25 120.6 203 45.8
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.0e-25 120.2 198 48.5
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 2.0e-25 120.2 178 53.9
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.0e-25 120.2 200 46.5
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.6e-25 119.8 198 44.9
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.6e-25 119.8 211 44.1
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.6e-25 119.8 211 44.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 2.6e-25 119.8 198 44.4
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 4.4e-25 119.0 170 53.5
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 7.4e-25 118.2 178 47.8
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.3e-24 117.5 182 49.5
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.2e-24 116.7 157 51.6
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.8e-24 116.3 241 38.2
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 6.3e-24 115.2 185 43.8
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 6.3e-24 115.2 180 47.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 6.3e-24 115.2 180 47.8
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 8.2e-24 114.8 181 51.9
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.1e-23 114.4 152 53.3
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.4e-23 114.0 179 46.4
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.4e-23 114.0 198 48.0
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.8e-23 113.6 198 37.9
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.4e-23 113.2 164 50.0
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 4.1e-23 112.5 189 46.6
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 7.0e-23 111.7 151 53.0
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 9.1e-23 111.3 211 39.8
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.0e-22 110.2 194 42.3
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 2.6e-22 109.8 217 38.2
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 2.6e-22 109.8 217 38.2
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 2.2e-21 106.7 201 41.8
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.5e-20 104.0 185 41.1
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.5e-20 102.1 202 42.6
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 7.2e-20 101.7 194 40.2
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 9.4e-20 101.3 194 42.8
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 9.4e-20 101.3 210 39.0
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 9.4e-20 101.3 197 38.6
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.6e-19 100.5 197 39.6
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 2.1e-19 100.1 195 40.5
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.1e-19 100.1 205 38.5
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.7e-19 99.8 198 40.4
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 4.7e-19 99.0 182 40.7
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 6.1e-19 98.6 220 38.6
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.4e-18 97.4 200 40.5
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.8e-18 97.1 221 38.5
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.3e-18 96.7 196 39.8
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 4.0e-18 95.9 177 40.7
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.0e-18 95.9 197 41.1
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.2e-18 95.5 210 38.1
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.2e-18 95.5 203 39.9
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.2e-18 95.5 198 41.9
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 6.7e-18 95.1 211 40.3
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.7e-18 95.1 183 39.9
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-17 94.4 198 38.4
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.6e-17 93.2 198 37.4
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.6e-17 93.2 198 37.4
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.6e-17 93.2 198 37.4
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.4e-17 92.4 196 39.8
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 7.5e-17 91.7 198 36.4
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 9.7e-17 91.3 222 39.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 2.2e-16 90.1 129 47.3
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.8e-16 89.7 82 63.4
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 6.3e-16 88.6 199 36.7
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.1e-15 87.8 185 37.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.8e-15 87.0 200 36.5
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.1e-15 86.3 200 32.5
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 4.1e-15 85.9 198 37.4
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 5.3e-15 85.5 184 38.0
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 7.0e-15 85.1 168 40.5
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.0e-14 83.6 171 40.9
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.6e-14 83.2 58 72.4
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.0e-13 81.3 173 41.0
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 2.2e-13 80.1 204 34.3
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 5.0e-13 79.0 170 37.6
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 8.5e-13 78.2 202 37.6
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.9e-12 77.0 213 38.5
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 1.6e-11 73.9 221 36.2
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 3.0e-10 69.7 58 62.1
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.0e-10 69.3 180 36.7
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 7.5e-09 65.1 164 34.1
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 2.8e-08 63.2 84 53.6
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 8.3e-08 61.6 89 43.8
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 5.4e-07 58.9 70 51.4
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.2e-06 57.8 70 51.4
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.2e-06 57.8 184 32.1


User provided reference genes

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