Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 5.6e-170 600.9 310 100.0
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.8e-123 446.4 314 77.1
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.5e-122 443.4 302 79.1
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 3.6e-100 369.0 297 69.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 6.5e-94 348.2 317 61.5
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.5e-93 346.3 326 60.7
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 2.1e-92 343.2 326 60.4
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 2.4e-88 329.7 302 60.9
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.2e-87 327.4 306 59.5
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.2e-87 327.4 306 61.1
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.9e-86 322.8 305 58.4
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.5e-85 319.7 325 56.0
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.5e-85 319.7 313 58.1
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 9.4e-85 317.8 332 56.0
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.6e-84 317.0 309 58.6
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.4e-80 303.1 316 55.4
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 5.9e-79 298.5 325 53.2
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 7.7e-79 298.1 327 54.4
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.0e-78 297.7 300 58.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.7e-78 297.0 336 52.4
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.9e-77 293.5 302 55.3
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.6e-76 290.4 328 51.5
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.6e-76 290.4 332 52.7
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 4.7e-76 288.9 322 53.7
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 8.0e-76 288.1 305 54.8
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.0e-75 287.7 327 52.9
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.3e-75 286.6 329 52.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.3e-75 286.6 333 49.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.0e-75 285.8 305 53.8
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 5.2e-75 285.4 308 54.9
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 6.7e-75 285.0 306 54.6
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 8.8e-75 284.6 307 54.1
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.2e-74 284.3 327 51.7
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 3.3e-74 282.7 330 50.9
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 5.7e-74 282.0 308 51.9
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.5e-74 281.6 330 50.6
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 7.5e-74 281.6 305 53.1
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.5e-74 281.6 327 52.6
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 9.7e-74 281.2 313 52.4
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.3e-73 280.8 305 52.5
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.8e-73 278.9 330 49.7
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.1e-72 277.7 318 53.1
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.4e-72 276.6 326 49.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.1e-72 276.2 304 51.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.1e-72 275.8 303 51.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 5.3e-72 275.4 290 53.8
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.3e-72 275.4 322 48.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 5.3e-72 275.4 331 50.2
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 9.1e-72 274.6 308 51.9
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 9.1e-72 274.6 316 53.2
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 9.1e-72 274.6 331 48.9
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.0e-71 273.5 311 51.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.0e-71 273.5 322 49.7
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.5e-71 272.3 308 52.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 4.5e-71 272.3 328 50.0
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.0e-70 271.2 328 49.4
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.3e-70 270.8 302 52.6
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.3e-70 270.8 303 50.5
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.3e-70 270.8 308 50.6
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.3e-70 270.8 319 50.8
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 1.7e-70 270.4 304 52.3
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.9e-70 269.6 316 51.6
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 5.0e-70 268.9 321 48.9
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 5.0e-70 268.9 321 48.0
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 6.5e-70 268.5 314 51.9
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 5.5e-69 265.4 328 49.4
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.2e-68 264.2 316 52.2
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.2e-68 264.2 322 51.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.2e-68 264.2 316 49.1
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.6e-68 263.8 305 50.5
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.1e-68 263.5 331 47.1
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.6e-68 262.7 315 49.2
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 6.1e-68 261.9 311 49.2
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 8.0e-68 261.5 288 53.1
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 8.0e-68 261.5 288 53.1
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 8.0e-68 261.5 288 53.1
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 8.0e-68 261.5 300 52.3
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.4e-67 260.8 342 47.4
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 2.3e-67 260.0 296 52.4
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 4.0e-67 259.2 304 50.7
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 4.0e-67 259.2 304 50.7
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 4.0e-67 259.2 304 50.7
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 6.8e-67 258.5 309 50.8
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 8.8e-67 258.1 311 47.9
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 1.2e-66 257.7 312 48.7
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.5e-66 257.3 337 46.9
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.0e-66 256.9 313 51.1
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.0e-66 256.9 325 48.9
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.4e-66 255.8 288 49.7
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 5.7e-66 255.4 316 50.6
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 9.8e-66 254.6 323 49.5
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-65 253.8 305 51.1
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.2e-65 253.4 302 51.3
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 2.8e-65 253.1 302 51.3
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 4.8e-65 252.3 284 53.5
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 6.3e-65 251.9 300 51.7
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 6.3e-65 251.9 300 51.7
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 8.3e-65 251.5 329 46.8
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 8.3e-65 251.5 318 48.4
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.8e-64 250.4 320 46.6
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 3.1e-64 249.6 316 47.5
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 4.1e-64 249.2 332 47.6
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.4e-64 248.8 331 48.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.0e-64 248.4 331 47.4
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 7.0e-64 248.4 304 50.0
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 4.5e-63 245.7 317 46.4
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.5e-63 245.7 331 47.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 5.9e-63 245.4 325 47.1
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 5.9e-63 245.4 333 47.4
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.7e-63 245.0 310 48.1
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.7e-62 243.8 333 47.1
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.9e-62 243.0 317 46.4
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 8.6e-62 241.5 330 45.8
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-61 241.1 318 45.9
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 5.5e-61 238.8 305 46.2
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.2e-61 238.4 293 46.8
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-60 236.1 304 47.7
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 3.6e-60 236.1 319 43.9
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 8.0e-60 235.0 315 47.0
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.2e-59 232.3 341 42.2
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 6.8e-59 231.9 303 48.5
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 6.8e-59 231.9 314 44.6
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.5e-58 230.7 305 45.9
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.0e-58 230.3 314 44.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.7e-57 227.3 319 44.5
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.2e-57 226.9 320 43.8
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.8e-56 223.8 298 44.3
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.0e-55 220.3 293 46.8
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-53 214.5 322 42.5
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 5.6e-53 212.2 296 44.3
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.0e-51 206.1 281 42.0
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.2e-50 204.5 270 47.0
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 6.4e-49 198.7 195 56.9
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.0e-46 191.4 280 38.9
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.0e-46 189.9 277 40.8
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.1e-45 188.0 251 44.2
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.3e-41 174.5 192 49.5
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.4e-40 170.2 173 54.9
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.2e-39 167.9 172 54.7
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.7e-39 166.8 307 39.7
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.4e-34 149.8 370 31.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.4e-34 149.8 370 31.6
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.3e-33 145.2 322 32.9
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-29 134.4 344 29.9
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.4e-27 127.1 300 31.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.0e-27 126.3 217 36.4
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.6e-26 123.6 217 35.5
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.2e-25 120.6 335 28.4
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.6e-23 112.8 200 34.0
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.9e-22 109.8 335 28.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.8e-20 103.6 244 28.7
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.0e-19 98.6 197 33.0
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.4e-18 96.7 244 27.0
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 8.4e-17 92.0 99 46.5
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.4e-16 90.5 125 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-14 84.3 248 27.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.6e-12 76.6 72 54.2
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 4.0e-11 73.2 63 61.9
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 2.9e-09 67.0 81 44.4
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-08 65.1 75 42.7


User provided reference genes

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