Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 7.5e-99 365.9 181 100.0
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 7.5e-99 365.9 181 100.0
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 1.7e-74 285.0 181 75.1
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 4.0e-68 263.8 177 71.2
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 2.0e-67 261.5 185 70.3
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 1.9e-62 245.0 181 66.9
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 6.2e-61 240.0 181 65.2
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 1.5e-59 235.3 181 63.5
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 2.5e-57 228.0 181 63.0
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 1.2e-56 225.7 181 64.6
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 1.2e-56 225.7 181 61.9
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 2.1e-56 224.9 178 65.2
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 7.9e-56 223.0 181 59.7
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 1.0e-55 222.6 181 58.6
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.8e-55 221.9 181 60.2
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 6.7e-55 219.9 181 59.7
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 1.5e-54 218.8 181 58.0
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 3.3e-54 217.6 181 60.8
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 4.3e-54 217.2 181 59.7
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 9.6e-54 216.1 181 58.0
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 1.3e-53 215.7 181 60.8
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.6e-53 215.3 181 59.7
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 3.7e-53 214.2 181 60.8
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 8.2e-53 213.0 181 59.1
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 8.2e-53 213.0 181 58.6
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 1.8e-52 211.8 181 58.6
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 3.1e-52 211.1 181 60.8
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 5.3e-52 210.3 181 58.0
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 6.9e-52 209.9 181 58.0
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 9.0e-52 209.5 181 59.1
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 1.2e-51 209.1 181 57.5
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 1.5e-51 208.8 181 56.9
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 2.0e-51 208.4 181 55.8
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 2.6e-51 208.0 181 60.8
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 2.6e-51 208.0 181 58.0
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.4e-51 207.6 181 55.8
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 3.4e-51 207.6 181 56.9
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 3.4e-51 207.6 181 58.6
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 7.6e-51 206.5 181 57.5
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 1.0e-50 206.1 181 56.9
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 6.5e-50 203.4 181 56.9
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 1.4e-49 202.2 181 56.4
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 1.9e-49 201.8 177 55.9
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 3.2e-49 201.1 181 54.7
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 3.2e-49 201.1 181 55.2
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 5.5e-49 200.3 179 56.4
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 9.3e-49 199.5 181 53.6
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 1.2e-48 199.1 181 54.1
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 1.2e-48 199.1 181 54.1
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 2.3e-47 194.9 181 53.6
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 1.1e-46 192.6 181 54.7
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 1.9e-46 191.8 181 52.5
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 1.9e-46 191.8 173 55.5
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 4.3e-46 190.7 182 55.5
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 3.7e-45 187.6 140 61.4
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 1.1e-44 186.0 176 54.5
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 9.0e-44 183.0 172 52.3
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 3.2e-41 174.5 109 76.1
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 5.5e-41 173.7 181 48.1
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 5.5e-41 173.7 148 59.5
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 2.3e-39 168.3 181 49.7
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 5.1e-39 167.2 149 57.0
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 5.1e-39 167.2 181 51.4
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 5.7e-38 163.7 173 48.6
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 2.2e-37 161.8 148 54.7
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 1.8e-36 158.7 181 48.6
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 5.3e-36 157.1 181 47.5
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 1.2e-35 156.0 172 50.0
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 2.6e-35 154.8 184 45.1
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 1.3e-34 152.5 169 46.7
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 6.5e-34 150.2 138 54.3
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 1.4e-33 149.1 158 50.0
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 1.2e-32 146.0 111 64.0
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 2.7e-32 144.8 133 55.6
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 2.7e-32 144.8 122 59.0
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.7e-29 134.4 111 57.7
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 1.1e-28 132.9 122 54.1
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 1.4e-28 132.5 148 48.0
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 7.7e-27 126.7 119 54.6
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 5.0e-26 124.0 121 52.1
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 3.2e-25 121.3 121 50.4
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 4.0e-23 114.4 119 50.4
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 1.7e-21 109.0 85 58.8
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 6.3e-21 107.1 85 58.8
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 1.4e-20 105.9 83 56.6
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 2.0e-19 102.1 86 54.7
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 1.3e-18 99.4 150 37.3
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 3.8e-18 97.8 85 54.1
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 5.0e-18 97.4 83 54.2
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.5e-17 95.9 70 62.9
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 1.6e-16 92.4 83 54.2
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 2.6e-14 85.1 74 52.7
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.2e-11 76.3 156 34.0
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 4.7e-08 64.3 168 23.8
ATR0665G577 Amborella trichopoda HOM05D007595 ORTHO05D009570 8.0e-08 63.5 69 42.0
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 1.4e-07 62.8 51 52.9
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 2.3e-07 62.0 79 40.5
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 5.2e-07 60.8 79 40.5
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 6.8e-07 60.5 169 23.1
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 6.8e-07 60.5 168 30.4
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 1.5e-06 59.3 79 39.2
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 2.0e-06 58.9 79 39.2
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 4.4e-06 57.8 150 25.3
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 4.4e-06 57.8 154 24.7
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 4.4e-06 57.8 152 24.3
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 5.7e-06 57.4 122 30.3
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 7.5e-06 57.0 154 24.7
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 9.8e-06 56.6 133 27.1
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 9.8e-06 56.6 177 22.6


User provided reference genes

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