Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 4.0e-237 824.3 401 100.0
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 8.6e-115 417.9 387 58.1
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 6.9e-104 381.7 393 52.4
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 1.5e-103 380.6 390 53.1
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 1.6e-100 370.5 385 51.4
Lalb_Chr07g0186991 Lupinus albus HOM05D007822 ORTHO05D009360 3.0e-99 366.3 381 52.0
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 1.8e-96 357.1 390 49.2
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 6.4e-94 348.6 382 48.7
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 8.4e-94 348.2 379 49.3
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 8.4e-94 348.2 388 50.0
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 1.4e-93 347.4 378 49.5
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 2.7e-92 343.2 391 48.6
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-90 337.8 383 48.3
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 2.5e-90 336.7 381 46.5
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 3.6e-89 332.8 382 47.4
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 6.2e-89 332.0 353 51.0
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 6.2e-89 332.0 384 47.1
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 1.1e-88 331.3 384 47.1
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 4.0e-88 329.3 378 46.0
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 4.0e-88 329.3 375 46.1
arahy.Tifrunner.gnm1.ann1.2QW5CK Arachis hypogaea HOM05D007822 ORTHO05D009360 2.0e-87 327.0 385 48.6
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.8e-87 325.5 375 45.3
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.3e-86 324.3 377 45.6
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.8e-86 322.8 377 46.2
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-85 321.2 357 49.6
arahy.Tifrunner.gnm1.ann1.GB1I3E Arachis hypogaea HOM05D007822 ORTHO05D009360 1.2e-84 317.8 389 46.3
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 7.9e-84 315.1 378 45.0
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 2.3e-83 313.5 383 46.0
arahy.Tifrunner.gnm1.ann1.30JHYY Arachis hypogaea HOM05D007822 ORTHO05D009360 3.0e-83 313.2 391 45.3
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 6.7e-83 312.0 386 47.2
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 3.8e-78 296.2 315 49.8
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 9.3e-77 291.6 347 46.4
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 9.3e-77 291.6 400 44.5
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.6e-76 290.8 378 43.1
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.6e-76 290.8 389 40.6
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 2.3e-75 287.0 378 43.7
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.1e-75 285.8 333 45.9
Lalb_Chr23g0273121 Lupinus albus HOM05D007822 ORTHO05D009360 4.3e-74 282.7 223 59.6
arahy.Tifrunner.gnm1.ann1.SE6DU5 Arachis hypogaea HOM05D007822 ORTHO05D009360 3.4e-71 273.1 248 53.2
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 2.2e-70 270.4 316 46.2
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.2e-68 264.6 382 41.1
arahy.Tifrunner.gnm1.ann1.B28JH2 Arachis hypogaea HOM05D007822 ORTHO05D009360 6.3e-65 252.3 303 46.9
Oeu042537.1 Olea europaea HOM05D007822 ORTHO05D009360 1.1e-64 251.5 384 39.3
Psat2g094240 Pisum sativum HOM05D007822 ORTHO05D009360 2.6e-63 246.9 223 55.6
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.0e-62 245.0 327 42.5
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 1.3e-62 244.6 323 44.6
Phvul.006G051900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.7e-62 244.2 235 48.9
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.4e-61 241.1 391 38.9
arahy.Tifrunner.gnm1.ann1.97QIN4 Arachis hypogaea HOM05D007822 ORTHO05D009360 4.6e-60 236.1 250 48.8
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 2.6e-58 230.3 253 47.8
arahy.Tifrunner.gnm1.ann1.IQQ1WH Arachis hypogaea HOM05D007822 ORTHO05D009360 3.3e-58 229.9 203 53.2
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 3.1e-56 223.4 175 64.0
arahy.Tifrunner.gnm1.ann1.UHL69B Arachis hypogaea HOM05D007822 ORTHO05D009360 6.9e-56 222.2 253 47.4
Sc09g0001470 Simmondsia chinensis HOM05D007822 ORTHO05D009360 1.2e-55 221.5 409 36.9
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 3.4e-55 219.9 397 35.8
Medtr6g034615 Medicago truncatula HOM05D007822 ORTHO05D009360 1.8e-43 181.0 184 48.9
TPR.G5267 Trifolium pratense HOM05D007822 ORTHO05D009360 3.7e-41 173.3 346 33.5
DCAR_014640 Daucus carota HOM05D007822 ORTHO05D009360 6.1e-36 156.0 198 42.9
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 8.0e-36 155.6 200 39.5
TPR.G19772 Trifolium pratense HOM05D007822 ORTHO05D009360 2.6e-34 150.6 190 43.2
arahy.Tifrunner.gnm1.ann1.LY7S5B Arachis hypogaea HOM05D007822 ORTHO05D009360 3.7e-33 146.7 301 35.9
TPR.G33966 Trifolium pratense HOM05D007822 ORTHO05D009360 7.0e-32 142.5 122 58.2
Lalb_Chr23g0273131 Lupinus albus HOM05D007822 ORTHO05D009360 1.2e-31 141.7 102 60.8
arahy.Tifrunner.gnm1.ann1.JV62Q3 Arachis hypogaea HOM05D007822 ORTHO05D009360 5.9e-31 139.4 130 49.2
Lalb_Chr23g0273141 Lupinus albus HOM05D007822 ORTHO05D009360 8.6e-30 135.6 102 59.8
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 8.8e-27 125.6 219 36.5
Psat5g099000 Pisum sativum HOM05D007822 ORTHO05D009360 1.4e-24 118.2 122 53.3
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 2.9e-22 110.5 133 47.4
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 3.8e-22 110.2 126 46.8
Medtr8g080950 Medicago truncatula HOM05D007822 ORTHO05D009360 6.6e-22 109.4 190 36.3
Lalb_Chr23g0273151 Lupinus albus HOM05D007822 ORTHO05D009360 1.2e-20 105.1 78 57.7
Medtr6g060160 Medicago truncatula HOM05D007822 ORTHO05D009360 2.3e-19 100.9 147 37.4
arahy.Tifrunner.gnm1.ann1.WW5NKJ Arachis hypogaea HOM05D007822 ORTHO05D009360 4.4e-18 96.7 75 58.7
TPR.G18088 Trifolium pratense HOM05D007822 ORTHO05D009360 1.4e-16 91.7 95 49.5
Medtr6g034605 Medicago truncatula HOM05D007822 ORTHO05D009360 2.4e-16 90.9 112 49.1
TPR.G24719 Trifolium pratense HOM05D007822 ORTHO05D009360 2.0e-15 87.8 122 41.8
TPR.G8151 Trifolium pratense HOM05D007822 ORTHO05D009360 2.7e-15 87.4 150 36.7
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 3.0e-14 84.0 78 65.4
Medtr3g084700 Medicago truncatula HOM05D007822 ORTHO05D009360 2.1e-12 77.8 124 39.5
Sc09g0001480 Simmondsia chinensis HOM05D007822 ORTHO05D009360 8.0e-12 75.9 128 36.7
Actinidia08199 Actinidia chinensis HOM05D007822 ORTHO05D009360 2.6e-10 70.9 87 39.1
AT5G49610 Arabidopsis thaliana HOM05D007162 ORTHO05D007631 3.4e-10 70.5 361 23.5
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 4.4e-10 70.1 358 23.7
AL8G23420 Arabidopsis lyrata HOM05D007162 ORTHO05D007631 9.8e-10 68.9 361 23.5
BraA02t08804Z Brassica rapa HOM05D007162 ORTHO05D007631 9.8e-10 68.9 395 22.0
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 9.8e-10 68.9 358 23.7
Medtr3g070037 Medicago truncatula HOM05D007822 ORTHO05D009360 9.8e-10 68.9 49 57.1
Sc19g0005840 Simmondsia chinensis HOM05D022095 ORTHO05D009360 1.7e-09 68.2 188 30.3
Gohir.D10G181300 Gossypium hirsutum HOM05D007162 ORTHO05D007631 2.2e-09 67.8 354 21.2
Gorai.011G202800 Gossypium raimondii HOM05D007162 ORTHO05D007631 2.2e-09 67.8 354 21.2
A02p38240 Brassica napus HOM05D007162 ORTHO05D007631 2.9e-09 67.4 395 22.0
TPR.G25296 Trifolium pratense HOM05D007822 ORTHO05D009360 2.9e-09 67.4 88 44.3
AUR62016246 Chenopodium quinoa HOM05D007162 ORTHO05D007631 3.7e-09 67.0 363 23.1
AUR62032769 Chenopodium quinoa HOM05D007162 ORTHO05D007631 4.9e-09 66.6 363 22.9
Gohir.A10G174800 Gossypium hirsutum HOM05D007162 ORTHO05D007631 4.9e-09 66.6 354 20.6
Carub.0008s0947 Capsella rubella HOM05D007162 ORTHO05D007631 1.1e-08 65.5 401 23.2
MBI19_g03280_MAGBIO Magnolia biondii HOM05D002153 ORTHO05D002137 1.1e-08 65.5 350 20.0
Nn4g25520 Nelumbo nucifera HOM05D007162 ORTHO05D007631 1.1e-08 65.5 393 21.4
arahy.Tifrunner.gnm1.ann1.632YKH Arachis hypogaea HOM05D007822 ORTHO05D009360 1.9e-08 64.7 74 48.6
BolC2t11828H Brassica oleracea HOM05D007162 ORTHO05D007631 3.2e-08 63.9 354 22.0
Sc06g0004600 Simmondsia chinensis HOM05D022095 ORTHO05D009360 3.2e-08 63.9 168 25.6
Aqoxy2G02919 Aquilegia oxysepala HOM05D007162 ORTHO05D007631 4.1e-08 63.5 353 21.5
Duzib151G0437 Durio zibethinus HOM05D007162 ORTHO05D007631 4.1e-08 63.5 358 21.5
BcaC03g17742 Brassica carinata HOM05D007162 ORTHO05D007631 5.4e-08 63.2 357 22.7
C02p57550 Brassica napus HOM05D007162 ORTHO05D007631 5.4e-08 63.2 357 22.7
CAN.G484.72 Capsicum annuum HOM05D007162 ORTHO05D007631 5.4e-08 63.2 355 23.4
Sc01g0006640 Simmondsia chinensis HOM05D019591 ORTHO05D009360 5.4e-08 63.2 204 26.5
Thhalv10004464m.g Eutrema salsugineum HOM05D007162 ORTHO05D007631 7.0e-08 62.8 400 22.0
Aa31LG11G8430 Aethionema arabicum HOM05D007162 ORTHO05D007631 9.2e-08 62.4 359 21.2
Ciclev10020526m.g Citrus clementina HOM05D002420 ORTHO05D002422 9.2e-08 62.4 406 21.9
Nitab4.5_0000059g0620 Nicotiana tabacum HOM05D000007 ORTHO05D000017 2.0e-07 61.2 357 23.2
COL.COLO4_34567 Corchorus olitorius HOM05D007162 ORTHO05D007631 2.7e-07 60.8 356 20.8
THA.LOC104818869 Tarenaya hassleriana HOM05D007162 ORTHO05D007631 2.7e-07 60.8 364 22.8
TAR375G1044 Trochodendron aralioides HOM05D007822 ORTHO05D009360 3.5e-07 60.5 81 35.8
EL10Ac3g05554 Beta vulgaris HOM05D007162 ORTHO05D007631 4.6e-07 60.1 360 21.7
Gorai.010G008800 Gossypium raimondii HOM05D000007 ORTHO05D000017 7.8e-07 59.3 225 25.8
Nitab4.5_0002150g0050 Nicotiana tabacum HOM05D007162 ORTHO05D007631 1.0e-06 58.9 354 23.2
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 1.3e-06 58.5 307 20.2
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 1.3e-06 58.5 360 21.9
Glyma.09G032600 Glycine max HOM05D007162 ORTHO05D007631 1.7e-06 58.2 354 22.0
Ah.07g201630 Amaranthus hybridus HOM05D007162 ORTHO05D007631 2.3e-06 57.8 227 27.8
Gohir.D06G004200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.3e-06 57.8 225 26.2
MD13G1148700 Malus domestica HOM05D007162 ORTHO05D007631 2.3e-06 57.8 354 20.9
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 3.0e-06 57.4 308 20.1
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 3.0e-06 57.4 352 21.6
TAR624G0469 Trochodendron aralioides HOM05D000007 ORTHO05D000521 3.0e-06 57.4 336 22.0
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 3.0e-06 57.4 352 21.6
ECA247G2297 Erigeron canadensis HOM05D000030 ORTHO05D000031 3.9e-06 57.0 369 24.4
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 3.9e-06 57.0 355 21.1
PSO782G2276 Papaver somniferum HOM05D008326 ORTHO05D001155 3.9e-06 57.0 279 23.7
Lsat_1_v5_gn_1_40801 Lactuca sativa HOM05D007162 ORTHO05D007631 5.0e-06 56.6 353 22.9
Sopen00g008500 Solanum pennellii HOM05D002420 ORTHO05D002422 5.0e-06 56.6 379 22.4
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 6.6e-06 56.2 314 22.9
Lalb_Chr20g0120651 Lupinus albus HOM05D007162 ORTHO05D007631 6.6e-06 56.2 351 21.7
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 6.6e-06 56.2 323 24.1
Dinv12683 Davidia involucrata HOM05D000007 ORTHO05D000039 8.6e-06 55.8 380 23.2
Gohir.A06G008600 Gossypium hirsutum HOM05D000007 ORTHO05D000017 8.6e-06 55.8 222 23.9
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 8.6e-06 55.8 332 24.4
Nitab4.5_0000434g0050 Nicotiana tabacum HOM05D002420 ORTHO05D002422 8.6e-06 55.8 378 23.5


User provided reference genes

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