Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 1.7e-68 262.7 145 100.0
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 1.2e-47 193.4 147 78.2
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 1.4e-46 189.9 145 77.2
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 5.1e-41 171.4 145 73.1
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 1.2e-37 160.2 148 68.9
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 4.9e-36 154.8 150 68.7
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 5.5e-27 124.8 161 55.3
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 9.3e-27 124.0 163 55.8
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 4.6e-26 121.7 161 55.3
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 8.2e-23 110.9 150 57.3
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 2.0e-21 106.3 148 56.8
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 4.5e-21 105.1 142 56.3
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 9.3e-19 97.4 153 51.6
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 1.2e-18 97.1 157 45.9
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 2.1e-18 96.3 150 49.3
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 3.5e-18 95.5 137 50.4
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 4.6e-18 95.1 150 51.3
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 7.9e-18 94.4 151 48.3
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 7.9e-18 94.4 154 49.4
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 1.0e-17 94.0 116 52.6
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 2.3e-17 92.8 111 55.9
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 5.1e-17 91.7 149 49.0
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 6.7e-17 91.3 152 46.7
VMungo0331G0467 Vigna mungo HOM05D005060 ORTHO05D005975 7.4e-16 87.8 138 51.4
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 9.7e-16 87.4 152 45.4
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 1.6e-15 86.7 145 44.8
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 3.7e-15 85.5 143 44.1
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 8.2e-15 84.3 147 46.9
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 1.1e-14 84.0 136 44.9
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.8e-14 83.2 143 44.8
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 2.4e-14 82.8 101 54.5
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 2.4e-14 82.8 159 41.5
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 4.1e-14 82.0 143 42.7
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 4.1e-14 82.0 148 42.6
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 4.1e-14 82.0 148 42.6
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 4.1e-14 82.0 148 42.6
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 5.3e-14 81.6 102 60.8
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 5.3e-14 81.6 159 48.4
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 9.0e-14 80.9 156 48.1
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 2.0e-13 79.7 109 48.6
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 2.0e-13 79.7 112 50.0
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 2.6e-13 79.3 147 44.2
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 2.6e-13 79.3 147 44.2
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 3.4e-13 79.0 149 45.6
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 4.5e-13 78.6 147 49.7
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 4.5e-13 78.6 151 45.0
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 5.9e-13 78.2 82 63.4
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 7.7e-13 77.8 155 45.2
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 1.0e-12 77.4 162 44.4
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.3e-12 77.0 138 41.3
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 1.3e-12 77.0 110 47.3
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 1.3e-12 77.0 151 44.4
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 3.8e-12 75.5 151 42.4
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 3.8e-12 75.5 151 44.4
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 8.5e-12 74.3 145 40.0
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.1e-11 73.9 162 42.0
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 2.5e-11 72.8 154 46.1
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 2.5e-11 72.8 154 46.1
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 2.5e-11 72.8 154 46.1
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 3.2e-11 72.4 154 44.8
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 3.2e-11 72.4 154 44.8
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 4.2e-11 72.0 111 46.8
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 5.5e-11 71.6 151 42.4
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 7.2e-11 71.2 137 40.1
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 1.2e-10 70.5 151 45.7
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 1.2e-10 70.5 133 42.1
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 2.1e-10 69.7 153 46.4
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 2.1e-10 69.7 153 46.4
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 2.1e-10 69.7 153 46.4
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 2.1e-10 69.7 149 47.0
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 2.1e-10 69.7 125 42.4
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 7.9e-10 67.8 149 42.3
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 1.0e-09 67.4 145 40.7
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 1.4e-09 67.0 153 41.8
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 3.0e-09 65.9 151 39.1
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 3.9e-09 65.5 151 37.7
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 3.9e-09 65.5 151 38.4
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 5.1e-09 65.1 116 40.5
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 5.1e-09 65.1 148 39.9
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 6.7e-09 64.7 145 37.2
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 8.8e-09 64.3 156 44.2
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.1e-08 63.9 114 43.9
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 2.5e-08 62.8 43 81.4
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 3.3e-08 62.4 142 40.1
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 7.4e-08 61.2 153 39.9
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 7.4e-08 61.2 135 37.0
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 9.7e-08 60.8 158 41.1
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.7e-07 60.1 147 39.5
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 2.8e-07 59.3 158 41.1
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 6.3e-07 58.2 124 40.3
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 1.1e-06 57.4 102 41.2
CiPaw.09G163900 Carya illinoinensis HOM05D005060 ORTHO05D005975 4.1e-06 55.5 104 39.4
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 6.9e-06 54.7 147 40.8


User provided reference genes

Program Settings