Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08341_v3 Cicer arietinum L. HOM05D002466 ORTHO05D002668 3.3e-110 401.7 204 100.0
Medtr7g088220 Medicago truncatula HOM05D002466 ORTHO05D002668 3.9e-71 271.9 202 72.3
Psat3g082920 Pisum sativum HOM05D002466 ORTHO05D002668 5.6e-70 268.1 197 70.6
Lj1g0021177 Lotus japonicus HOM05D002466 ORTHO05D002668 1.8e-68 263.1 198 69.2
Lalb_Chr14g0365111 Lupinus albus HOM05D002466 ORTHO05D002668 1.9e-65 253.1 210 65.7
VMungo1383G1240 Vigna mungo HOM05D002466 ORTHO05D002668 3.4e-59 232.3 203 60.6
Glyma.03G119200 Glycine max HOM05D002466 ORTHO05D002668 8.4e-58 227.6 204 62.3
arahy.Tifrunner.gnm1.ann1.0GJ727 Arachis hypogaea HOM05D002466 ORTHO05D002668 5.5e-57 224.9 188 62.2
Phvul.001G108900 Phaseolus vulgaris HOM05D002466 ORTHO05D002668 9.3e-57 224.2 201 59.7
arahy.Tifrunner.gnm1.ann1.CP70Z4 Arachis hypogaea HOM05D002466 ORTHO05D002668 2.2e-50 203.0 178 59.6
TPR.G23648 Trifolium pratense HOM05D002466 ORTHO05D002668 2.2e-50 203.0 147 72.1
Lj2g0018509 Lotus japonicus HOM05D002466 ORTHO05D002668 3.1e-44 182.6 205 52.7
Ca_04450_v3 Cicer arietinum L. HOM05D002466 ORTHO05D002668 4.5e-43 178.7 185 55.7
Medtr6g026870 Medicago truncatula HOM05D002466 ORTHO05D002668 5.0e-42 175.3 166 59.0
Lalb_Chr06g0174231 Lupinus albus HOM05D002466 ORTHO05D002668 4.2e-41 172.2 217 48.8
Sabra16G0022300 Salix brachista HOM05D002466 ORTHO05D002668 1.3e-39 167.2 197 51.3
ClCG10G016780 Citrullus lanatus HOM05D002466 ORTHO05D002668 5.1e-39 165.2 206 45.6
COL.COLO4_08086 Corchorus olitorius HOM05D002466 ORTHO05D002668 8.7e-39 164.5 165 55.8
Sabra16G0029800 Salix brachista HOM05D002466 ORTHO05D002668 8.7e-39 164.5 173 54.9
RhsimUnG0022200 Rhododendron simsii HOM05D002466 ORTHO05D002668 7.4e-38 161.4 177 51.4
Thecc.05G128200 Theobroma cacao HOM05D002466 ORTHO05D002668 7.4e-38 161.4 169 53.3
Ciclev10011933m.g Citrus clementina HOM05D002466 ORTHO05D002668 9.7e-38 161.0 205 47.8
Potri.006G025100 Populus trichocarpa HOM05D002466 ORTHO05D002668 2.2e-37 159.8 172 53.5
Potri.016G023400 Populus trichocarpa HOM05D002466 ORTHO05D002668 4.8e-37 158.7 172 53.5
CiPaw.09G052500 Carya illinoinensis HOM05D002466 ORTHO05D002668 6.3e-37 158.3 179 50.8
Gohir.A09G118200 Gossypium hirsutum HOM05D002466 ORTHO05D002668 1.1e-36 157.5 193 47.2
Sed0024353 Sechium edule HOM05D002466 ORTHO05D002668 1.4e-36 157.1 186 46.8
Gohir.D09G115100 Gossypium hirsutum HOM05D002466 ORTHO05D002668 1.8e-36 156.8 189 47.6
Thecc.05G128100 Theobroma cacao HOM05D002466 ORTHO05D002668 5.3e-36 155.2 193 47.2
MELO3C009698.2 Cucumis melo HOM05D002466 ORTHO05D002668 9.0e-36 154.5 206 44.2
Psat1g087280 Pisum sativum HOM05D002466 ORTHO05D002668 1.2e-35 154.1 168 54.8
Gorai.006G132700 Gossypium raimondii HOM05D002466 ORTHO05D002668 1.5e-35 153.7 189 47.1
CSS0009682 Camellia sinensis var. sinensis HOM05D002466 ORTHO05D002668 2.0e-35 153.3 177 49.2
Dinv37051 Davidia involucrata HOM05D002466 ORTHO05D002668 2.0e-35 153.3 185 52.4
vmacro07603 Vaccinium macrocarpon HOM05D002466 ORTHO05D002668 2.0e-35 153.3 182 48.4
arahy.Tifrunner.gnm1.ann1.E3M9UC Arachis hypogaea HOM05D002466 ORTHO05D002668 1.3e-34 150.6 202 47.0
arahy.Tifrunner.gnm1.ann1.54MJSX Arachis hypogaea HOM05D002466 ORTHO05D002668 3.8e-34 149.1 201 46.8
Duzib093G0232 Durio zibethinus HOM05D002466 ORTHO05D002668 3.8e-34 149.1 172 52.3
TAR633G2012 Trochodendron aralioides HOM05D002466 ORTHO05D002668 8.5e-34 147.9 200 48.0
Prupe.7G024800 Prunus persica HOM05D002466 ORTHO05D002668 1.1e-33 147.5 205 43.9
Dinv14551 Davidia involucrata HOM05D002466 ORTHO05D002668 1.4e-33 147.1 189 49.2
Nn7g37299 Nelumbo nucifera HOM05D002466 ORTHO05D002668 1.9e-33 146.7 195 47.7
Carub.0004s2337 Capsella rubella HOM05D002466 ORTHO05D002668 4.2e-33 145.6 172 49.4
Aqoxy1G00004 Aquilegia oxysepala HOM05D002466 ORTHO05D002668 9.4e-33 144.4 203 47.3
Actinidia37848 Actinidia chinensis HOM05D002466 ORTHO05D002668 1.2e-32 144.1 178 47.8
Oeu062542.1 Olea europaea HOM05D002466 ORTHO05D002668 2.7e-32 142.9 173 51.4
CsaV3_3G039570 Cucumis sativus L. HOM05D002466 ORTHO05D002668 3.6e-32 142.5 208 42.3
C04p02390 Brassica napus HOM05D002466 ORTHO05D002668 7.9e-32 141.4 155 51.6
BolC4t21885H Brassica oleracea HOM05D002466 ORTHO05D002668 7.9e-32 141.4 155 51.6
MD12G1015700 Malus domestica HOM05D002466 ORTHO05D002668 7.9e-32 141.4 170 49.4
BraA05t19197Z Brassica rapa HOM05D002466 ORTHO05D002668 1.4e-31 140.6 155 51.6
A05p02010 Brassica napus HOM05D002466 ORTHO05D002668 2.3e-31 139.8 155 51.0
MBI19_g28104_MAGBIO Magnolia biondii HOM05D002466 ORTHO05D002668 5.1e-31 138.7 178 50.6
AL4G39020 Arabidopsis lyrata HOM05D002466 ORTHO05D002668 2.0e-30 136.7 155 51.0
AT2G41050 Arabidopsis thaliana HOM05D002466 ORTHO05D002668 2.6e-30 136.3 155 51.0
PGR042G2977 Punica granatum HOM05D002466 ORTHO05D002668 5.7e-30 135.2 192 46.4
CARHR136160 Cardamine hirsuta HOM05D002466 ORTHO05D002668 7.4e-30 134.8 204 42.2
Lj2A414G27 Lonicera japonica HOM05D002466 ORTHO05D002668 7.4e-30 134.8 202 42.6
Sp4g23380 Schrenkiella parvula HOM05D002466 ORTHO05D002668 7.4e-30 134.8 155 51.0
Aa31LG3G1000 Aethionema arabicum HOM05D002466 ORTHO05D002668 1.3e-29 134.0 195 45.1
Thhalv10017959m.g Eutrema salsugineum HOM05D002466 ORTHO05D002668 1.7e-29 133.7 192 43.8
BcaC02g12746 Brassica carinata HOM05D002466 ORTHO05D002668 2.8e-29 132.9 155 50.3
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 3.7e-29 132.5 193 46.6
ATR0307G008 Amborella trichopoda HOM05D002466 ORTHO05D002668 4.8e-29 132.1 174 47.1
THA.LOC104803245 Tarenaya hassleriana HOM05D002466 ORTHO05D002668 8.2e-29 131.3 169 46.7
Eucgr.A02168 Eucalyptus grandis HOM05D002466 ORTHO05D002668 1.4e-28 130.6 150 48.7
PSO384G3696 Papaver somniferum HOM05D002466 ORTHO05D002668 2.4e-28 129.8 208 42.3
PSO339G3570 Papaver somniferum HOM05D002466 ORTHO05D002668 4.1e-28 129.0 208 40.9
Sc07g0007920 Simmondsia chinensis HOM05D002466 ORTHO05D002668 6.9e-28 128.3 201 39.3
RcHm_v2.0_Chr3g0495241 Rosa chinensis HOM05D002466 ORTHO05D002668 3.4e-27 125.9 176 47.2
MBI13_g02392_MAGBIO Magnolia biondii HOM05D002466 ORTHO05D002668 7.7e-27 124.8 158 48.7
MSTRG.19742 Avicennia marina HOM05D002466 ORTHO05D002668 1.3e-26 124.0 176 47.2
Migut.J01599 Erythranthe guttata HOM05D002466 ORTHO05D002668 5.0e-26 122.1 169 46.7
GSVIVG01025862001 Vitis vinifera HOM05D002466 ORTHO05D002668 5.0e-26 122.1 164 50.0
SGA_v2.0_scaffold66G22351 Striga asiatica HOM05D002466 ORTHO05D002668 1.9e-25 120.2 168 45.2
HanXRQChr04g0125511 Helianthus annuus HOM05D002466 ORTHO05D002668 3.2e-25 119.4 168 47.0
EL10Ac5g11613 Beta vulgaris HOM05D002466 ORTHO05D002668 4.2e-25 119.0 199 41.2
AUR62037100 Chenopodium quinoa HOM05D002466 ORTHO05D002668 7.9e-24 114.8 170 43.5
AUR62042362 Chenopodium quinoa HOM05D002466 ORTHO05D002668 1.1e-22 110.9 166 43.4
Ah.12g062250 Amaranthus hybridus HOM05D002466 ORTHO05D002668 2.0e-22 110.2 219 35.6
ECA236G0850 Erigeron canadensis HOM05D002466 ORTHO05D002668 1.7e-21 107.1 148 45.9
Sabra06G0018400 Salix brachista HOM05D002466 ORTHO05D000276 1.1e-20 104.4 145 46.2
ATR0307G061 Amborella trichopoda HOM05D002466 ORTHO05D002668 5.3e-20 102.1 139 46.8
Eucgr.A02167 Eucalyptus grandis HOM05D002466 ORTHO05D002668 6.5e-18 95.1 187 37.4
Os01g0266800 Oryza sativa ssp. japonica HOM05D002466 ORTHO05D002668 1.1e-17 94.4 160 41.9
Glyma.19G123500 Glycine max HOM05D002466 ORTHO05D002668 2.5e-17 93.2 93 60.2
SEGI_36082 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 4.2e-17 92.4 190 39.5
Lsat_1_v5_gn_8_83681 Lactuca sativa HOM05D002466 ORTHO05D002668 7.2e-17 91.7 171 42.7
Zm00001eb128150 Zea mays HOM05D002466 ORTHO05D002668 1.6e-16 90.5 179 36.3
SEGI_07405 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 2.1e-16 90.1 184 38.6
HPP92_021169 Vanilla planifolia HOM05D002466 ORTHO05D002668 2.7e-16 89.7 184 39.7
SEGI_25731 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 3.6e-16 89.4 183 36.6
Zm00001eb333170 Zea mays HOM05D002466 ORTHO05D002668 4.7e-16 89.0 179 36.3
SEGI_35112 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 6.1e-16 88.6 179 38.0
SEGI_23740 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 8.0e-16 88.2 171 39.2
AL7G33720 Arabidopsis lyrata HOM05D002466 ORTHO05D002668 3.0e-15 86.3 100 52.0
ECA232G2919 Erigeron canadensis HOM05D002466 ORTHO05D002668 1.5e-14 84.0 121 45.5
Cpa.g.sc33.187 Carica papaya HOM05D002466 ORTHO05D002668 1.3e-13 80.9 218 32.6
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 3.7e-13 79.3 123 43.9
AT4G20100 Arabidopsis thaliana HOM05D002466 ORTHO05D002668 4.8e-13 79.0 102 48.0
Nitab4.5_0006904g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.0e-11 73.6 127 41.7
SEGI_25132 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 7.7e-11 71.6 158 38.6
Glyma.01G178800 Glycine max HOM05D002466 ORTHO05D002668 2.2e-10 70.1 178 33.7
BcaB02g10941 Brassica carinata HOM05D002466 ORTHO05D002668 2.9e-10 69.7 131 32.8
SMO271G0104 Selaginella moellendorffii HOM05D002466 ORTHO05D002668 2.9e-10 69.7 157 33.1
CARHR226940 Cardamine hirsuta HOM05D002466 ORTHO05D002668 5.0e-10 68.9 95 43.2
Actinidia19156 Actinidia chinensis HOM05D002466 ORTHO05D002668 6.5e-10 68.6 174 35.1
AagrBONN_evm.TU.Sc2ySwM_228.605 Anthoceros agrestis HOM05D002466 ORTHO05D002668 8.5e-10 68.2 180 34.4
MD15G1270100 Malus domestica HOM05D002466 ORTHO05D002668 1.1e-09 67.8 172 35.5
Lsat_1_v5_gn_4_176020 Lactuca sativa HOM05D002466 ORTHO05D002668 1.9e-09 67.0 169 33.7
Potri.007G031800 Populus trichocarpa HOM05D002466 ORTHO05D002668 2.5e-09 66.6 172 33.7
Cc07_g05180 Coffea canephora HOM05D002466 ORTHO05D002668 3.2e-09 66.2 174 32.2
Prupe.7G147900 Prunus persica HOM05D002466 ORTHO05D002668 3.2e-09 66.2 195 31.8
Sabra07G0027600 Salix brachista HOM05D002466 ORTHO05D002668 4.2e-09 65.9 169 33.7
TWI73G0248 Tripterygium wilfordii HOM05D002466 ORTHO05D002668 4.2e-09 65.9 167 32.3
Carub.0007s2102 Capsella rubella HOM05D002466 ORTHO05D002668 5.5e-09 65.5 105 42.9
FAN28G0015 Fragaria x ananassa HOM05D002466 ORTHO05D002668 5.5e-09 65.5 173 35.3
SEGI_17141 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 5.5e-09 65.5 136 35.3
FAN23G0251 Fragaria x ananassa HOM05D002466 ORTHO05D002668 9.4e-09 64.7 173 34.7
SalBow1G7014 Salvia bowleyana HOM05D002466 ORTHO05D002668 1.6e-08 63.9 168 30.4
ECA232G3931 Erigeron canadensis HOM05D002466 ORTHO05D002668 2.1e-08 63.5 165 33.9
FAN26G3072 Fragaria x ananassa HOM05D002466 ORTHO05D002668 2.1e-08 63.5 173 34.1
Manes.12G099200 Manihot esculenta HOM05D002466 ORTHO05D002668 2.1e-08 63.5 173 35.3
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.1e-08 63.5 194 27.8
GSVIVG01019034001 Vitis vinifera HOM05D002466 ORTHO05D002668 2.1e-08 63.5 188 31.9
HanXRQChr09g0265101 Helianthus annuus HOM05D002466 ORTHO05D002668 3.6e-08 62.8 59 54.2
SGA_v2.0_scaffold15G07168 Striga asiatica HOM05D002466 ORTHO05D002668 3.6e-08 62.8 194 31.4
BolC1t00217H Brassica oleracea HOM05D002466 ORTHO05D002668 4.7e-08 62.4 169 33.1
Mapoly0036s0057 Marchantia polymorpha HOM05D002466 ORTHO05D002668 4.7e-08 62.4 225 29.8
Oeu020266.1 Olea europaea HOM05D002466 ORTHO05D002668 4.7e-08 62.4 47 61.7
TWI09G0566 Tripterygium wilfordii HOM05D002466 ORTHO05D002668 4.7e-08 62.4 176 33.0
arahy.Tifrunner.gnm1.ann1.842B2E Arachis hypogaea HOM05D002466 ORTHO05D002668 6.1e-08 62.0 170 32.9
Phvul.002G025900 Phaseolus vulgaris HOM05D002466 ORTHO05D002668 6.1e-08 62.0 177 32.2
PGSC0003DMG400010043 Solanum tuberosum HOM05D002466 ORTHO05D002668 6.1e-08 62.0 168 31.5
CAN.G836.3 Capsicum annuum HOM05D002466 ORTHO05D002668 8.0e-08 61.6 163 30.1
Migut.H00521 Erythranthe guttata HOM05D002466 ORTHO05D002668 8.0e-08 61.6 169 31.4
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 8.0e-08 61.6 194 27.3
RcHm_v2.0_Chr2g0102821 Rosa chinensis HOM05D002466 ORTHO05D002668 8.0e-08 61.6 173 35.3
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 1.0e-07 61.2 195 30.8
FvH4_1g14140 Fragaria vesca HOM05D002466 ORTHO05D002668 1.4e-07 60.8 199 32.7
FAN19G0567 Fragaria x ananassa HOM05D002466 ORTHO05D002668 1.4e-07 60.8 172 34.3
Cfa004257 Carpinus fangiana HOM05D002466 ORTHO05D002668 1.8e-07 60.5 168 33.3
Glyma.16G142300 Glycine max HOM05D002466 ORTHO05D002668 1.8e-07 60.5 170 31.8
arahy.Tifrunner.gnm1.ann1.EPG4M4 Arachis hypogaea HOM05D002466 ORTHO05D002668 2.3e-07 60.1 177 33.9
Sopen02g034580 Solanum pennellii HOM05D002466 ORTHO05D002668 2.3e-07 60.1 195 30.8
CiPaw.01G031800 Carya illinoinensis HOM05D002466 ORTHO05D002668 3.0e-07 59.7 167 32.9
Lalb_Chr05g0227491 Lupinus albus HOM05D002466 ORTHO05D002668 3.0e-07 59.7 173 32.4
Hund15165 Selenicereus undatus HOM05D002466 ORTHO05D002668 3.0e-07 59.7 40 65.0
MSTRG.23817 Avicennia marina HOM05D002466 ORTHO05D002668 5.2e-07 58.9 191 31.4
Hma1.2p1_1714F.1_g298950 Hydrangea macrophylla HOM05D002466 ORTHO05D002668 5.2e-07 58.9 175 30.3
Aqoxy5G01716 Aquilegia oxysepala HOM05D002466 ORTHO05D002668 6.8e-07 58.5 168 32.1
CSS0045234 Camellia sinensis var. sinensis HOM05D002466 ORTHO05D002668 6.8e-07 58.5 60 53.3
Medtr5g019120 Medicago truncatula HOM05D002466 ORTHO05D002668 6.8e-07 58.5 168 31.5
Nn5g29486 Nelumbo nucifera HOM05D002466 ORTHO05D002668 8.8e-07 58.2 167 31.7
QL06p044710 Quercus lobata HOM05D002466 ORTHO05D002668 8.8e-07 58.2 178 36.5
vmacro21607 Vaccinium macrocarpon HOM05D002466 ORTHO05D002668 8.8e-07 58.2 176 30.1
BraA01t00196Z Brassica rapa HOM05D002466 ORTHO05D002668 1.2e-06 57.8 171 33.3
Gohir.D12G066800 Gossypium hirsutum HOM05D002466 ORTHO05D002668 1.2e-06 57.8 177 32.2
MBI16_g10984_MAGBIO Magnolia biondii HOM05D002466 ORTHO05D002668 1.2e-06 57.8 48 50.0
Phvul.003G251100 Phaseolus vulgaris HOM05D002466 ORTHO05D002668 1.2e-06 57.8 167 32.3
Glyma.02G059500 Glycine max HOM05D002466 ORTHO05D002668 1.5e-06 57.4 170 32.4
Gohir.A12G066400 Gossypium hirsutum HOM05D002466 ORTHO05D002668 1.5e-06 57.4 173 34.7
PGR119G0452 Punica granatum HOM05D002466 ORTHO05D002668 1.5e-06 57.4 172 31.4
TPR.G7364 Trifolium pratense HOM05D002466 ORTHO05D002668 1.5e-06 57.4 33 72.7
BcaNung03526 Brassica carinata HOM05D002466 ORTHO05D002668 2.0e-06 57.0 171 32.2
C01p02250 Brassica napus HOM05D002466 ORTHO05D002668 2.0e-06 57.0 171 32.2
Manes.13G135400 Manihot esculenta HOM05D002466 ORTHO05D002668 2.0e-06 57.0 170 32.9
PSO700G0136 Papaver somniferum HOM05D002466 ORTHO05D002668 2.6e-06 56.6 163 30.1
CSS0043290 Camellia sinensis var. sinensis HOM05D002466 ORTHO05D002668 3.4e-06 56.2 194 28.4
Lsat_1_v5_gn_2_87420 Lactuca sativa HOM05D002466 ORTHO05D002668 3.4e-06 56.2 46 54.3
unitig_62.g23401 Utricularia gibba HOM05D002466 ORTHO05D002668 3.4e-06 56.2 153 32.0
Dinv39376 Davidia involucrata HOM05D002466 ORTHO05D002668 4.4e-06 55.8 166 28.9
Thhalv10025420m.g Eutrema salsugineum HOM05D002466 ORTHO05D002668 4.4e-06 55.8 171 31.6
Gorai.008G070100 Gossypium raimondii HOM05D002466 ORTHO05D002668 4.4e-06 55.8 176 32.4
vmacro17871 Vaccinium macrocarpon HOM05D002466 ORTHO05D002668 4.4e-06 55.8 172 34.9
CSS0034276 Camellia sinensis var. sinensis HOM05D002466 ORTHO05D002668 5.7e-06 55.5 194 26.8
HanXRQChr14g0452251 Helianthus annuus HOM05D002466 ORTHO05D002668 5.7e-06 55.5 200 29.0
CSS0043833 Camellia sinensis var. sinensis HOM05D002466 ORTHO05D002668 7.5e-06 55.1 44 56.8
Cpa.g.sc37.86 Carica papaya HOM05D002466 ORTHO05D002668 7.5e-06 55.1 165 32.7
Dinv26793 Davidia involucrata HOM05D002466 ORTHO05D002668 7.5e-06 55.1 185 31.4
Sc16g0001170 Simmondsia chinensis HOM05D002466 ORTHO05D002668 7.5e-06 55.1 168 31.5
Atru.chr3.503 Acer truncatum HOM05D002466 ORTHO05D002668 9.8e-06 54.7 180 34.4
Sp7g34500 Schrenkiella parvula HOM05D002466 ORTHO05D002668 9.8e-06 54.7 158 33.5
Sed0007293 Sechium edule HOM05D002466 ORTHO05D002668 9.8e-06 54.7 170 34.1


User provided reference genes

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