Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 2.9e-101 372.1 213 100.0
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 9.3e-76 287.3 220 73.6
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-75 287.0 214 74.3
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.3e-72 276.9 215 74.0
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.9e-71 271.2 215 77.7
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-70 270.4 252 64.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.0e-70 269.6 215 70.7
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 9.4e-68 260.8 214 69.2
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.7e-67 259.2 213 69.5
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.3e-64 250.4 210 68.1
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 6.3e-64 248.1 213 66.7
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 5.3e-63 245.0 213 68.1
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 9.1e-63 244.2 209 67.5
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 3.8e-61 238.8 208 66.8
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.3e-58 229.6 211 63.5
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 7.5e-49 198.0 162 72.2
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.5e-44 183.0 206 52.9
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 7.5e-41 171.4 214 51.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 6.3e-40 168.3 245 46.9
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.2e-37 159.8 221 47.5
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 8.5e-37 157.9 223 48.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 5.5e-36 155.2 227 46.7
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 9.4e-36 154.5 232 47.4
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.7e-35 152.9 216 47.7
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-34 150.6 214 47.2
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.0e-34 149.1 206 47.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.2e-34 148.7 209 46.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.5e-33 147.1 218 46.3
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.0e-33 146.7 226 43.4
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.6e-33 146.4 207 45.4
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.4e-33 146.0 209 45.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.4e-33 146.0 212 45.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 4.4e-33 145.6 207 46.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 4.4e-33 145.6 214 42.1
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 6.3e-32 141.7 212 46.7
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.4e-31 139.8 214 43.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.1e-31 139.4 216 43.5
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 4.1e-31 139.0 212 44.3
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 4.1e-31 139.0 213 51.6
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.0e-31 138.3 212 45.3
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.6e-30 137.1 217 45.6
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.0e-30 136.7 212 42.9
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.7e-30 136.3 211 42.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.7e-30 136.3 218 42.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.5e-30 136.0 218 42.7
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.9e-30 135.2 218 42.7
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.0e-29 134.4 220 41.4
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.0e-29 134.4 212 41.5
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.7e-29 133.7 212 42.9
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.3e-29 133.3 218 42.7
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.9e-29 132.9 225 42.7
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 6.6e-29 131.7 213 39.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 8.6e-29 131.3 214 41.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.1e-28 131.0 193 45.6
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-28 131.0 217 47.0
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.9e-28 130.2 210 41.4
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.3e-28 129.0 213 42.3
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.6e-28 128.6 220 43.2
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 7.3e-28 128.3 215 39.5
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 9.5e-28 127.9 215 41.9
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.6e-27 125.9 212 39.2
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.6e-27 125.9 215 45.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 3.6e-27 125.9 207 43.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 6.1e-27 125.2 214 40.2
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 8.0e-27 124.8 215 39.5
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 8.0e-27 124.8 208 39.9
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-26 123.6 214 40.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-26 123.6 214 41.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.8e-26 123.6 206 39.3
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-26 123.2 214 40.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 8.9e-26 121.3 217 42.4
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-25 120.9 217 41.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.0e-25 120.2 233 39.1
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 2.0e-25 120.2 216 40.7
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.6e-25 119.8 213 40.4
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.4e-25 119.0 231 37.7
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 5.7e-25 118.6 204 40.2
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-24 117.5 220 39.5
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.7e-24 117.1 217 39.6
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 2.9e-24 116.3 217 41.5
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 4.9e-24 115.5 217 40.6
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 6.4e-24 115.2 209 40.7
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 8.3e-24 114.8 210 40.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.1e-23 114.4 217 44.7
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.1e-23 114.4 192 43.2
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-23 114.0 217 39.2
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-23 114.0 214 37.9
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.8e-23 113.6 218 43.6
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.4e-23 113.2 220 37.7
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.1e-23 112.5 203 45.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.4e-23 112.1 214 39.3
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 7.0e-23 111.7 217 40.6
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.0e-23 111.7 196 39.8
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 9.2e-23 111.3 214 37.9
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.6e-22 110.5 216 39.8
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.6e-22 110.5 217 40.1
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-22 110.2 211 38.4
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.7e-22 109.8 223 37.7
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 3.5e-22 109.4 217 38.2
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 3.5e-22 109.4 217 38.2
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 3.5e-22 109.4 217 38.2
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 5.9e-22 108.6 215 37.7
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.7e-21 107.1 214 38.3
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 3.0e-21 106.3 213 35.7
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 5.0e-21 105.5 199 40.7
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 6.6e-21 105.1 224 39.3
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-20 104.4 196 39.8
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.1e-20 104.4 210 36.7
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.5e-20 104.0 214 38.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.5e-20 104.0 214 38.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.3e-20 102.8 196 39.8
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-20 102.8 196 39.8
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-20 102.8 196 39.8
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.3e-20 102.8 196 40.8
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.3e-20 102.4 202 37.6
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.3e-20 102.4 214 37.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-19 100.9 196 39.3
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.6e-19 100.5 222 37.4
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.6e-19 100.5 220 35.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.1e-19 100.1 224 38.8
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.6e-19 99.4 233 36.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 6.2e-19 98.6 204 37.7
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 8.0e-19 98.2 197 38.6
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 8.0e-19 98.2 227 37.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.0e-18 97.8 199 38.7
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.0e-18 97.8 108 55.6
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-18 97.4 204 37.7
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.1e-18 96.3 207 39.1
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.2e-18 95.5 219 36.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.2e-18 95.5 219 36.5
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.2e-17 94.4 208 39.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.0e-17 93.6 195 39.5
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.4e-17 92.8 215 38.1
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 4.4e-17 92.4 213 35.7
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.4e-17 92.4 208 36.5
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 5.8e-17 92.0 186 39.8
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 7.5e-17 91.7 208 39.4
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 9.8e-17 91.3 193 37.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 9.8e-17 91.3 210 35.2
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-16 90.9 196 37.2
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.3e-16 90.9 196 37.2
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-16 90.9 210 36.2
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 4.9e-16 89.0 199 36.2
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 8.3e-16 88.2 206 35.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-15 87.8 199 36.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.1e-15 87.8 215 34.4
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-15 86.7 173 38.7
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 2.4e-15 86.7 173 38.7
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.2e-15 86.3 82 59.8
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 7.0e-15 85.1 178 38.8
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.2e-14 84.3 217 37.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.0e-14 83.6 180 35.6
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.5e-14 82.8 71 62.0
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 2.3e-13 80.1 226 32.3
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 3.9e-13 79.3 170 37.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 8.6e-13 78.2 74 58.1
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.9e-12 77.0 221 28.5
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.5e-12 76.6 221 34.8
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.3e-12 75.1 213 28.2
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.3e-10 70.1 139 36.7
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 4.0e-10 69.3 202 32.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.5e-09 67.4 202 30.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 3.4e-09 66.2 212 30.2
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 7.5e-09 65.1 123 39.8
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.7e-08 63.9 202 29.7
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.9e-07 60.5 207 27.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.2e-07 59.7 200 33.0
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.2e-07 59.7 207 28.5
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.4e-07 58.9 204 29.4
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 9.2e-07 58.2 211 30.3
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.2e-06 57.8 196 27.6
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.7e-06 56.6 111 36.9
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.6e-06 55.8 139 31.7


User provided reference genes

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