Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 5.7e-113 411.0 217 100.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 6.8e-98 360.9 237 82.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 3.6e-91 338.6 237 78.5
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.4e-90 336.7 234 78.6
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.8e-90 336.3 234 77.8
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.3e-90 335.9 234 78.6
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 4.4e-89 331.6 234 76.9
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 7.5e-89 330.9 234 76.9
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.2e-88 329.3 234 77.4
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.2e-86 323.6 235 75.7
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.6e-86 323.2 234 76.1
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.7e-80 302.0 225 73.3
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.9e-80 301.6 225 73.3
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.7e-77 293.1 233 67.8
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.0e-77 292.4 235 66.8
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 5.0e-77 291.6 234 67.1
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.1e-76 290.4 215 70.2
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.5e-76 290.0 233 68.2
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.3e-74 282.7 234 66.2
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.1e-74 282.3 234 65.4
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 6.4e-72 274.6 257 60.7
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 8.3e-72 274.2 221 67.4
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.1e-71 273.9 235 64.7
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.9e-71 273.1 235 66.0
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.4e-71 272.7 235 65.1
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.2e-71 272.3 235 65.1
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 4.1e-71 271.9 217 67.7
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 4.1e-71 271.9 210 66.7
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.2e-71 270.8 235 64.3
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.2e-70 270.4 236 64.4
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.6e-70 270.0 256 59.8
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.5e-70 268.9 236 63.1
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.5e-70 268.9 236 63.6
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.5e-70 268.9 234 64.5
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.6e-70 268.5 236 65.3
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.8e-70 267.7 236 64.0
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 7.8e-70 267.7 236 65.3
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 7.8e-70 267.7 235 63.0
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.3e-69 266.9 292 54.5
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.3e-69 266.9 234 62.4
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 6.6e-69 264.6 211 65.9
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 8.6e-69 264.2 221 65.2
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 8.6e-69 264.2 234 63.2
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.5e-68 263.5 217 65.9
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 2.5e-68 262.7 239 61.1
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 4.3e-68 261.9 235 63.8
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 4.3e-68 261.9 233 61.8
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.6e-67 260.0 224 64.3
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.6e-67 260.0 217 64.1
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.6e-67 260.0 225 64.4
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 2.1e-67 259.6 236 60.6
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 2.1e-67 259.6 235 61.7
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 3.6e-67 258.8 234 60.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.6e-67 258.8 238 59.7
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 4.7e-67 258.5 211 66.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 6.2e-67 258.1 234 60.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 8.1e-67 257.7 233 61.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.4e-66 256.9 238 60.9
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.4e-66 256.9 226 62.4
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.4e-66 256.9 215 66.5
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.4e-66 256.9 211 64.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.4e-66 256.9 229 62.0
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.8e-66 256.5 235 60.4
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 2.3e-66 256.1 236 60.6
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 2.3e-66 256.1 237 61.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.3e-66 256.1 234 59.0
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 4.0e-66 255.4 234 60.7
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 5.2e-66 255.0 235 60.0
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 5.2e-66 255.0 217 65.4
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 5.2e-66 255.0 218 64.7
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 8.9e-66 254.2 215 63.7
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.5e-65 253.4 236 58.5
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.5e-65 253.4 218 62.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.4e-65 252.3 233 60.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.4e-65 252.3 233 63.5
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 4.4e-65 251.9 233 63.1
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.4e-65 251.9 233 63.1
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.6e-65 251.1 213 66.2
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.7e-64 250.0 235 59.1
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.2e-64 249.6 236 59.3
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-64 249.6 235 59.6
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.2e-64 249.6 222 64.9
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 3.8e-64 248.8 209 63.2
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 4.9e-64 248.4 235 58.3
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 4.9e-64 248.4 256 55.5
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 6.4e-64 248.1 239 59.8
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 8.4e-64 247.7 232 60.3
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 8.4e-64 247.7 235 59.6
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 8.4e-64 247.7 235 59.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.1e-63 247.3 231 59.7
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.1e-63 247.3 226 61.9
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.4e-63 246.9 235 58.7
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.4e-63 246.9 214 63.1
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.4e-63 246.9 210 65.2
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.9e-63 246.5 234 59.0
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.9e-63 246.5 224 62.9
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.4e-63 246.1 219 61.6
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 2.4e-63 246.1 209 62.2
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.4e-63 246.1 234 59.8
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 7.1e-63 244.6 215 62.3
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 7.1e-63 244.6 209 64.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 9.2e-63 244.2 213 63.4
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.2e-63 244.2 238 60.1
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 3.5e-62 242.3 230 60.9
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 3.5e-62 242.3 264 54.2
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.0e-62 241.5 213 61.5
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 2.3e-61 239.6 170 77.6
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 3.0e-61 239.2 224 59.8
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.1e-60 237.3 226 58.8
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-60 237.3 241 58.1
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-60 237.3 241 58.1
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.3e-60 235.7 231 58.0
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 4.3e-60 235.3 241 56.0
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 5.6e-60 235.0 232 59.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.1e-59 233.0 226 59.3
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.4e-58 230.3 220 55.5
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.4e-58 229.6 223 57.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.1e-58 229.2 234 56.4
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 6.9e-58 228.0 235 55.3
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.6e-54 216.9 199 56.3
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.7e-54 216.1 214 58.9
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 7.8e-54 214.5 169 69.8
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.0e-53 214.2 301 45.5
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.4e-49 199.1 236 49.6
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-47 194.1 163 66.3
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.8e-45 186.8 129 79.1
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 6.7e-45 184.9 216 50.9
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.5e-44 183.0 218 46.3
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 5.6e-44 181.8 225 48.0
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.1e-43 179.9 217 50.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 6.2e-43 178.3 171 56.7
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.0e-41 173.3 148 65.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 2.6e-41 172.9 210 48.1
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 3.4e-41 172.6 157 60.5
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 5.8e-41 171.8 175 49.7
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.9e-40 169.5 161 59.0
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 3.8e-40 169.1 134 67.2
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 6.4e-40 168.3 129 69.0
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.4e-39 167.2 206 50.5
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.8e-37 160.2 260 38.8
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.5e-36 157.1 145 62.8
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.9e-36 156.8 106 78.3
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 7.4e-36 154.8 106 77.4
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 5.3e-34 148.7 158 55.1
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 9.0e-34 147.9 223 45.3
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.5e-33 147.1 214 44.9
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-33 146.7 117 67.5
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 4.5e-33 145.6 120 63.3
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.2e-31 139.0 274 36.1
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 4.2e-31 139.0 213 41.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.9e-29 132.5 123 61.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.1e-28 131.0 153 53.6
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 2.8e-27 126.3 104 64.4
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 8.5e-24 114.8 188 40.4
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 9.3e-23 111.3 147 46.9
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 3.9e-21 105.9 106 52.8
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 3.9e-21 105.9 78 71.8
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.8e-19 99.8 59 81.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.5e-17 94.0 93 58.1
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 5.5e-15 85.5 72 62.5
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.6e-14 84.0 50 82.0
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.8e-13 80.5 102 46.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 5.1e-13 79.0 80 56.2
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 8.8e-13 78.2 60 68.3
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.4e-12 75.9 141 40.4
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 7.4e-12 75.1 46 78.3
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 7.4e-12 75.1 148 37.2
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.4e-12 75.1 209 32.1
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.2e-11 73.6 90 51.1
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 4.1e-10 69.3 134 41.8
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 4.1e-10 69.3 75 54.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 4.1e-10 69.3 43 74.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 1.5e-09 67.4 41 78.0
TPR.G8100 Trifolium pratense HOM05D000001 ORTHO05D048480 2.2e-08 63.5 43 81.4
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.1e-07 61.2 138 34.1
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 3.2e-07 59.7 38 76.3
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 6.1e-06 55.5 44 68.2


User provided reference genes

Program Settings