Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.1e-210 736.5 402 100.0
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.2e-158 562.8 411 79.1
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.4e-157 559.3 410 78.5
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 8.6e-131 471.1 412 67.0
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.1e-128 464.2 419 68.5
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.4e-128 463.8 412 65.3
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 9.2e-125 451.1 424 67.0
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.2e-124 450.7 428 62.6
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 4.6e-124 448.7 453 63.8
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 3.6e-113 412.5 432 60.2
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.8e-99 367.1 443 57.8
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 7.6e-95 351.7 443 54.9
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.0e-83 313.2 451 46.3
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 7.4e-82 308.5 451 46.1
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.3e-81 307.8 447 45.4
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.3e-75 287.0 456 43.4
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 3.3e-74 283.1 449 43.4
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 4.8e-73 279.3 435 43.2
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 3.1e-72 276.6 449 48.3
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 7.7e-71 271.9 457 47.3
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 6.5e-70 268.9 444 41.2
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.4e-69 267.7 458 41.0
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.5e-69 266.9 452 43.8
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 7.2e-69 265.4 442 42.1
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 2.7e-68 263.5 449 41.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 6.1e-68 262.3 452 42.7
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.0e-67 261.5 438 42.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.8e-67 260.8 442 42.3
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.7e-67 258.8 453 41.9
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.1e-66 258.1 443 40.2
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.5e-66 257.7 433 41.3
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 4.4e-66 256.1 456 41.7
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.2e-65 253.8 440 40.7
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 2.8e-65 253.4 454 41.9
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 6.3e-65 252.3 441 42.2
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.4e-64 251.1 459 39.2
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.1e-64 249.6 454 41.0
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.6e-63 246.9 452 40.9
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.6e-63 246.9 430 40.9
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 3.4e-63 246.5 439 39.4
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 5.0e-62 242.7 443 39.5
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.9e-61 240.7 445 39.6
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.6e-60 237.7 432 41.7
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.6e-60 236.5 446 39.0
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-59 235.0 439 41.2
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 2.3e-59 233.8 442 41.0
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.0e-59 233.4 439 41.0
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.3e-58 229.9 438 40.4
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 2.4e-56 223.8 455 37.1
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 7.7e-55 218.8 466 37.8
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.3e-54 218.0 437 40.0
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.7e-54 217.6 440 37.7
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.0e-51 208.4 348 41.1
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.4e-51 208.0 437 35.9
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.0e-51 206.5 429 36.4
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 2.0e-50 204.1 437 38.2
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 7.5e-50 202.2 382 39.3
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.4e-48 197.2 323 39.9
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 2.0e-47 194.1 491 35.2
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 5.9e-47 192.6 419 36.3
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 2.9e-46 190.3 434 36.2
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 6.5e-46 189.1 430 37.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.5e-46 189.1 330 40.3
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 8.5e-46 188.7 430 37.2
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.1e-45 188.3 437 36.6
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.5e-45 187.2 330 40.0
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 3.2e-45 186.8 427 36.3
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 5.5e-45 186.0 428 37.6
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.2e-44 184.9 436 37.6
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 1.2e-44 184.9 425 35.1
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.2e-44 184.9 421 34.9
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.7e-44 183.7 441 36.1
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.7e-44 183.7 449 35.0
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 3.6e-44 183.3 447 34.2
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.0e-43 181.8 422 36.0
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 3.0e-43 180.3 429 33.6
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.0e-43 179.9 435 36.3
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 6.8e-43 179.1 428 37.1
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 6.8e-43 179.1 427 35.1
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 6.8e-43 179.1 434 36.9
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.5e-42 177.9 445 34.6
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 3.4e-42 176.8 446 36.1
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 5.7e-42 176.0 435 34.9
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 2.2e-41 174.1 439 33.3
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.2e-41 174.1 444 32.2
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.2e-41 174.1 452 35.8
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.2e-41 174.1 428 36.0
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.8e-41 173.7 466 33.3
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.4e-40 171.4 443 34.5
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.4e-40 171.4 415 34.7
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.8e-40 171.0 452 33.8
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.1e-40 169.9 471 34.6
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 2.7e-39 167.2 460 32.0
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 4.5e-39 166.4 431 32.9
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 7.7e-39 165.6 427 31.9
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.0e-38 165.2 441 34.7
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.9e-38 163.7 419 32.5
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.1e-37 161.8 442 33.9
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.5e-37 161.4 352 35.2
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.9e-37 161.0 435 32.6
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.2e-37 160.2 442 33.9
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.1e-36 157.5 411 34.1
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 4.7e-36 156.4 455 32.1
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.0e-35 155.2 414 31.2
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.8e-35 154.5 441 32.4
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.8e-35 154.5 426 34.7
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 2.3e-35 154.1 448 34.6
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 4.0e-35 153.3 419 32.0
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.5e-34 151.4 431 31.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.0e-34 151.0 417 34.1
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.0e-34 151.0 419 32.0
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.6e-34 150.6 422 35.3
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.6e-34 150.6 410 32.7
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 5.7e-34 149.4 416 32.9
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.5e-34 149.1 426 34.0
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 7.5e-34 149.1 440 34.3
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 9.8e-34 148.7 322 36.6
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.3e-33 148.3 443 34.1
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 1.7e-33 147.9 438 31.7
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.7e-33 147.9 314 33.8
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 2.2e-33 147.5 427 32.8
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.7e-33 146.7 420 33.3
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 1.8e-32 144.4 423 32.9
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.4e-32 144.1 407 31.7
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.1e-32 143.7 381 33.6
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.1e-32 143.7 413 32.7
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.1e-32 143.3 352 34.1
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 5.4e-32 142.9 414 31.6
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 7.0e-32 142.5 430 32.8
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 9.2e-32 142.1 441 31.1
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.2e-31 141.7 433 34.2
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.7e-31 140.6 414 31.4
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.5e-31 140.2 329 37.1
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.5e-31 139.8 432 31.2
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.7e-30 137.9 423 32.6
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 5.0e-30 136.3 407 31.2
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 6.6e-30 136.0 463 28.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.9e-29 134.4 397 29.7
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 2.5e-29 134.0 395 30.6
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-28 131.7 360 31.7
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 4.7e-28 129.8 422 29.4
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 4.7e-28 129.8 453 29.1
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.4e-27 128.3 333 33.0
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.0e-27 127.1 318 36.2
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 4.0e-27 126.7 405 31.9
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-26 124.4 349 31.2
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 2.0e-26 124.4 426 30.8
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.6e-26 124.0 418 29.9
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.2e-25 120.9 256 34.8
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 3.7e-25 120.2 404 30.7
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.1e-24 118.6 421 30.9
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 1.8e-24 117.9 430 29.3
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.4e-24 117.5 415 31.3
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.6e-23 114.8 263 36.5
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 3.0e-22 110.5 317 32.2
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 3.0e-22 110.5 334 30.2
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.1e-21 108.6 432 29.4
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.5e-21 108.2 402 30.1
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.9e-21 107.8 426 29.8
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.1e-20 104.4 264 34.5
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.8e-20 104.0 427 28.6
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.7e-17 93.6 310 32.3
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.1e-16 92.0 434 27.0
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.9e-16 91.3 288 29.9
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.6e-15 88.2 404 29.0
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 7.8e-15 85.9 413 27.8
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-14 85.5 358 29.1
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.7e-14 84.7 406 25.9
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 5.0e-14 83.2 442 27.6
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 5.0e-14 83.2 148 37.2
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 8.1e-12 75.9 179 35.8
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 5.2e-11 73.2 98 44.9
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 5.2e-11 73.2 191 33.5
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.2e-10 72.0 107 43.9
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.8e-10 69.7 140 35.7
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 7.1e-08 62.8 195 33.3
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 7.1e-08 62.8 98 45.9
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 1.2e-07 62.0 74 51.4
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 2.1e-07 61.2 76 43.4
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 3.5e-07 60.5 76 43.4
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 3.5e-07 60.5 76 43.4
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.0e-06 58.9 379 26.6
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 6.6e-06 56.2 131 36.6


User provided reference genes

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