Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.4e-68 261.5 131 100.0
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 2.2e-59 232.3 129 89.1
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 5.6e-47 191.0 132 78.0
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 6.2e-46 187.6 132 75.0
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 1.8e-45 186.0 134 76.1
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 2.0e-44 182.6 134 74.6
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 7.3e-39 164.1 133 66.9
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 9.6e-39 163.7 132 68.2
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 3.6e-38 161.8 130 67.7
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 4.6e-33 144.8 129 63.6
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.1e-31 140.2 126 61.9
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 9.6e-31 137.1 129 60.5
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 1.3e-30 136.7 129 59.7
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 8.1e-30 134.0 129 58.1
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 1.7e-27 126.3 127 56.7
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 1.7e-27 126.3 127 56.7
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 1.9e-26 122.9 129 54.3
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.9e-26 122.9 129 55.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 1.2e-25 120.2 128 52.3
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.6e-25 119.8 134 53.0
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 2.1e-25 119.4 132 52.3
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 3.5e-25 118.6 130 50.8
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.4e-21 106.7 137 49.6
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.4e-21 106.7 125 47.2
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 1.8e-21 106.3 129 49.6
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 4.0e-21 105.1 124 52.4
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 4.0e-21 105.1 127 47.2
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 5.3e-21 104.8 129 50.4
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 6.9e-21 104.4 129 49.6
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 9.0e-21 104.0 128 51.6
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 9.0e-21 104.0 127 48.8
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.3e-19 100.1 127 46.5
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.8e-19 98.6 126 44.4
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 4.9e-19 98.2 126 45.2
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 8.4e-19 97.4 127 48.8
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 1.1e-18 97.1 130 47.7
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 1.1e-18 97.1 130 47.7
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.9e-18 96.3 127 47.2
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.2e-18 95.5 125 42.4
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 3.2e-18 95.5 115 49.6
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 4.2e-18 95.1 126 48.4
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 5.5e-18 94.7 127 48.0
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 7.1e-18 94.4 128 47.7
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.3e-18 94.0 129 41.1
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.1e-17 92.8 128 41.4
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.9e-17 90.9 130 42.3
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.9e-17 90.9 130 42.3
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 7.9e-17 90.9 126 45.2
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.3e-16 90.1 129 45.0
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.8e-16 89.7 126 40.5
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 3.9e-16 88.6 126 47.6
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.7e-16 87.8 126 40.5
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.7e-16 87.8 128 42.2
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 8.7e-16 87.4 131 40.5
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 1.5e-15 86.7 126 39.7
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.9e-15 86.3 134 41.8
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.9e-15 86.3 126 40.5
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.7e-15 84.7 130 40.8
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.7e-15 84.7 125 40.0
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.4e-15 84.3 126 44.4
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 7.4e-15 84.3 108 47.2
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 7.4e-15 84.3 108 47.2
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.3e-14 83.6 131 42.7
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 1.6e-14 83.2 107 42.1
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 2.8e-14 82.4 124 44.4
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 2.8e-14 82.4 120 44.2
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 8.2e-14 80.9 107 41.1
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.2e-14 80.9 129 37.2
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-13 80.5 128 37.5
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.4e-13 80.1 129 41.9
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 1.4e-13 80.1 127 40.2
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.8e-13 79.7 107 41.1
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.4e-13 79.3 124 42.7
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 3.1e-13 79.0 109 40.4
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 3.1e-13 79.0 97 49.5
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 3.1e-13 79.0 120 45.0
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.1e-13 78.6 129 36.4
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 4.1e-13 78.6 126 42.1
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 5.3e-13 78.2 131 41.2
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 5.3e-13 78.2 136 36.0
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 6.9e-13 77.8 129 35.7
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.2e-12 77.0 138 38.4
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 2.0e-12 76.3 116 41.4
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 2.0e-12 76.3 116 41.4
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.0e-12 76.3 122 37.7
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.6e-12 75.9 132 39.4
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 3.4e-12 75.5 129 38.8
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 5.9e-12 74.7 102 45.1
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.6e-12 74.3 134 34.3
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 1.0e-11 73.9 135 34.8
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-11 73.6 121 36.4
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.7e-11 73.2 134 34.3
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-11 72.8 134 34.3
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.9e-11 72.4 128 34.4
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 2.9e-11 72.4 125 38.4
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 5.0e-11 71.6 127 40.9
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 5.0e-11 71.6 126 38.1
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 6.5e-11 71.2 131 37.4
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.4e-11 70.9 134 34.3
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 8.4e-11 70.9 128 39.8
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 1.1e-10 70.5 127 37.0
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.4e-10 70.1 126 38.9
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 2.5e-10 69.3 129 34.1
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 7.2e-10 67.8 129 38.0
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 7.2e-10 67.8 140 35.0
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 7.2e-10 67.8 140 35.0
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.2e-10 67.8 127 33.1
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.6e-09 66.6 136 33.1
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 2.1e-09 66.2 126 27.8
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.7e-09 65.9 133 33.8
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 3.5e-09 65.5 125 42.4
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 4.6e-09 65.1 125 30.4
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 6.1e-09 64.7 129 34.1
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.3e-08 63.5 127 37.8
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.0e-08 62.4 137 35.8
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 3.9e-08 62.0 132 31.8
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 5.1e-08 61.6 133 33.1
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 6.7e-08 61.2 131 35.1
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 1.1e-07 60.5 136 37.5
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.9e-07 59.7 91 39.6
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 2.5e-07 59.3 137 35.0
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.5e-07 59.3 125 31.2
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 4.3e-07 58.5 133 34.6
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 5.7e-07 58.2 103 35.9
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 5.7e-07 58.2 103 35.9
CDE10G1145 Ceratophyllum demersum HOM05D000286 ORTHO05D002905 5.7e-07 58.2 100 30.0
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 7.4e-07 57.8 125 34.4
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.7e-07 57.4 130 33.8
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 9.7e-07 57.4 133 33.1
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-06 57.0 133 33.1
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.6e-06 56.6 133 32.3
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-06 56.6 133 32.3
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-06 56.6 134 35.1
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-06 56.2 133 32.3
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-06 56.2 132 32.6
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.7e-06 55.5 125 26.4
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 6.3e-06 54.7 125 31.2
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.2e-06 54.3 133 32.3
Medtr7g082725 Medicago truncatula HOM05D004062 ORTHO05D004417 8.2e-06 54.3 37 81.1
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 8.2e-06 54.3 123 28.5


User provided reference genes

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