Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.8e-68 260.8 132 100.0
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.1e-58 229.9 129 89.1
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 2.6e-44 182.2 130 76.2
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 2.5e-42 175.6 132 74.2
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 7.1e-42 174.1 130 73.1
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 2.7e-41 172.2 132 72.7
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 5.3e-37 157.9 124 70.2
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.4e-34 149.8 129 66.7
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 1.4e-34 149.8 130 63.8
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 1.4e-34 149.8 131 63.4
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.2e-33 146.7 126 65.9
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 3.6e-33 145.2 129 64.3
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 1.9e-31 139.4 129 61.2
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 4.3e-31 138.3 129 61.2
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 4.1e-29 131.7 129 59.7
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 2.9e-27 125.6 131 55.7
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 2.9e-27 125.6 131 55.7
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 5.5e-26 121.3 134 55.2
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 7.2e-26 120.9 129 55.0
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.4e-24 116.7 132 53.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 3.9e-24 115.2 128 51.6
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 5.1e-24 114.8 131 53.4
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 3.3e-23 112.1 137 53.3
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 3.7e-22 108.6 125 47.2
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.8e-21 106.3 124 53.2
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.4e-21 105.9 127 49.6
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 4.1e-21 105.1 127 46.5
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 6.9e-21 104.4 127 52.8
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 6.9e-21 104.4 125 50.4
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 3.4e-20 102.1 129 50.4
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 4.5e-20 101.7 127 52.8
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.9e-20 101.3 127 49.6
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 5.9e-20 101.3 125 50.4
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.0e-19 100.5 127 46.5
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 1.3e-19 100.1 127 51.2
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 1.7e-19 99.8 130 50.0
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 1.7e-19 99.8 130 50.0
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 2.2e-19 99.4 126 50.0
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.8e-19 98.6 129 43.4
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.5e-19 97.8 126 43.7
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 8.5e-19 97.4 130 43.8
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 2.5e-18 95.9 128 50.8
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 3.2e-18 95.5 126 45.2
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 7.2e-18 94.4 125 43.2
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.6e-17 93.2 129 46.5
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 1.6e-17 93.2 126 50.0
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 1.6e-17 93.2 117 49.6
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.6e-17 93.2 129 45.7
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.7e-17 92.4 130 43.1
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.7e-17 92.4 130 43.1
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.0e-16 90.5 131 42.0
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.0e-16 90.5 131 42.0
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.3e-16 89.4 126 40.5
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.7e-16 87.8 126 40.5
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 1.5e-15 86.7 126 39.7
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 2.0e-15 86.3 126 41.3
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.7e-15 84.7 131 43.5
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.7e-15 84.7 134 41.8
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.7e-15 84.7 125 40.8
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 9.7e-15 84.0 120 45.8
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.2e-14 82.8 131 38.9
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 4.8e-14 81.6 126 38.1
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 4.8e-14 81.6 121 44.6
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 6.3e-14 81.3 93 48.4
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 8.2e-14 80.9 127 40.2
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.1e-13 80.5 130 40.0
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-13 80.5 128 39.1
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.8e-13 79.7 134 37.3
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 1.8e-13 79.7 107 40.2
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.8e-13 79.7 127 42.5
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 4.1e-13 78.6 107 40.2
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 5.3e-13 78.2 133 40.6
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.3e-13 78.2 135 40.0
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 5.3e-13 78.2 108 43.5
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 5.3e-13 78.2 108 43.5
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 7.0e-13 77.8 129 37.2
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 9.1e-13 77.4 126 41.3
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-12 77.0 127 37.8
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.6e-12 76.6 138 38.4
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.6e-12 76.6 129 39.5
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.0e-12 76.3 129 39.5
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.0e-12 76.3 130 36.2
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 2.6e-12 75.9 121 43.8
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 2.6e-12 75.9 121 43.8
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 2.6e-12 75.9 138 36.2
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 4.5e-12 75.1 125 43.2
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 4.5e-12 75.1 123 39.0
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.9e-12 74.7 131 35.9
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 5.9e-12 74.7 102 44.1
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.0e-11 73.9 124 40.3
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 1.7e-11 73.2 135 34.8
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.7e-11 73.2 124 37.9
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-11 72.8 136 34.6
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.9e-11 72.4 126 38.9
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.9e-11 72.4 127 37.8
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 3.8e-11 72.0 126 38.9
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.8e-11 72.0 136 33.8
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.0e-11 71.6 136 34.6
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.5e-11 71.2 136 34.6
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.1e-10 70.5 136 34.6
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-10 70.5 136 34.6
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-10 70.5 136 34.6
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 1.1e-10 70.5 126 40.5
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.5e-10 70.1 124 36.3
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 1.9e-10 69.7 129 38.8
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 2.5e-10 69.3 122 37.7
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 4.2e-10 68.6 129 34.1
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 9.4e-10 67.4 126 40.5
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.1e-09 66.2 129 36.4
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.7e-09 65.9 127 33.9
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 2.7e-09 65.9 138 31.9
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 3.6e-09 65.5 127 28.3
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.6e-09 65.5 127 33.9
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 4.7e-09 65.1 135 34.1
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.0e-08 63.9 140 33.6
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.0e-08 63.9 140 33.6
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.3e-08 62.8 137 35.8
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.3e-08 62.8 133 33.8
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 3.0e-08 62.4 129 34.9
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 4.0e-08 62.0 129 34.9
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.2e-08 61.6 125 36.8
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 8.8e-08 60.8 136 37.5
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 1.2e-07 60.5 133 33.8
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.2e-07 60.5 133 33.8
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 1.5e-07 60.1 137 35.0
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 3.3e-07 58.9 133 33.1
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 4.4e-07 58.5 136 31.6
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.4e-07 58.5 133 33.1
Medtr7g082725 Medicago truncatula HOM05D004062 ORTHO05D004417 4.4e-07 58.5 89 46.1
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 5.7e-07 58.2 133 32.3
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.7e-07 58.2 133 32.3
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 5.7e-07 58.2 127 32.3
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 7.5e-07 57.8 137 32.8
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.5e-07 57.8 133 32.3
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.5e-07 57.8 132 32.6
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.5e-07 57.8 134 35.1
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 9.7e-07 57.4 132 31.8
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.7e-06 56.6 119 29.4
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.7e-06 56.6 128 25.8
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.8e-06 55.8 133 32.3
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.8e-06 55.8 126 28.6
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 3.7e-06 55.5 135 29.6
Medtr3g100640 Medicago truncatula HOM05D004062 ORTHO05D004417 6.3e-06 54.7 73 52.1
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 8.2e-06 54.3 108 33.3
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 8.2e-06 54.3 108 33.3


User provided reference genes

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