Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 7.2e-245 850.1 425 100.0
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 7.2e-245 850.1 425 100.0
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 9.0e-187 657.1 431 80.5
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 9.0e-187 657.1 443 78.6
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 1.6e-183 646.4 426 79.1
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 3.7e-164 582.0 426 71.6
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 1.6e-159 566.6 429 68.3
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 1.1e-152 543.9 427 67.9
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 6.1e-151 538.1 431 67.1
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 2.5e-149 532.7 413 68.3
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 3.6e-143 512.3 430 61.9
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 1.4e-142 510.4 429 65.5
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 8.8e-134 481.1 428 63.3
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 8.6e-97 358.2 426 50.2
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 4.9e-92 342.4 430 47.4
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 4.9e-92 342.4 425 47.3
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 1.0e-89 334.7 423 47.8
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 1.7e-89 334.0 426 46.2
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 5.1e-89 332.4 436 47.0
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 6.6e-89 332.0 426 46.0
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 3.3e-88 329.7 444 46.6
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 3.6e-87 326.2 431 46.2
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 1.4e-86 324.3 433 46.7
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.8e-86 323.9 449 45.2
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 1.5e-85 320.9 434 45.6
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 1.7e-84 317.4 435 44.4
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 2.2e-84 317.0 444 45.5
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 2.9e-84 316.6 441 45.6
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 4.9e-84 315.8 437 45.8
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 1.9e-83 313.9 440 44.8
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 1.9e-83 313.9 434 44.2
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 2.4e-83 313.5 421 45.6
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 1.6e-82 310.8 431 44.8
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 6.0e-82 308.9 426 43.9
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 7.8e-82 308.5 451 44.1
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 1.0e-81 308.1 436 44.3
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 2.3e-81 307.0 440 44.3
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 5.1e-81 305.8 439 43.7
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 8.6e-81 305.1 437 45.1
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 8.6e-81 305.1 437 45.1
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 1.1e-80 304.7 434 43.5
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 1.9e-80 303.9 436 44.3
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 1.2e-79 301.2 438 45.7
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 3.6e-79 299.7 438 43.4
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 4.7e-79 299.3 437 42.8
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 6.2e-79 298.9 443 43.6
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 6.2e-79 298.9 437 43.2
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 9.9e-77 291.6 440 42.0
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 9.9e-77 291.6 440 42.0
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 1.3e-76 291.2 436 41.3
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 2.2e-76 290.4 428 44.4
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.9e-76 290.0 437 41.0
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 3.8e-76 289.7 442 43.2
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 6.4e-76 288.9 439 40.1
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 8.4e-76 288.5 438 40.6
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 1.9e-75 287.3 455 40.7
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 5.4e-75 285.8 459 38.8
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 9.2e-75 285.0 447 42.7
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 1.6e-74 284.3 431 42.2
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 2.7e-74 283.5 423 41.8
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 3.5e-74 283.1 417 43.4
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 6.0e-74 282.3 405 43.7
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 3.0e-73 280.0 430 42.6
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 8.7e-73 278.5 405 44.0
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 7.3e-72 275.4 464 41.2
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 1.6e-71 274.2 436 42.0
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 2.1e-71 273.9 463 40.8
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 3.6e-71 273.1 416 42.1
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 6.2e-71 272.3 452 42.0
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 1.8e-70 270.8 441 41.7
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 1.8e-70 270.8 435 40.0
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 3.1e-70 270.0 442 42.1
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 1.5e-69 267.7 453 41.3
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 1.7e-68 264.2 456 39.9
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 2.9e-68 263.5 396 43.4
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 3.2e-67 260.0 419 41.3
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 5.4e-67 259.2 456 39.7
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 7.1e-67 258.8 419 40.3
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 3.5e-66 256.5 410 42.2
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 4.6e-66 256.1 465 37.8
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 6.0e-66 255.8 468 38.0
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 7.8e-66 255.4 442 40.7
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 8.7e-65 251.9 427 41.0
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 7.3e-64 248.8 433 39.3
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 1.6e-63 247.7 428 40.9
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 1.1e-62 245.0 431 38.5
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 4.0e-62 243.0 206 62.1
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 1.5e-61 241.1 425 40.5
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 7.6e-61 238.8 422 38.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 7.6e-61 238.8 441 38.3
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 8.4e-60 235.3 420 38.6
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 5.4e-59 232.6 429 39.4
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 2.1e-58 230.7 420 38.3
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 1.3e-57 228.0 409 36.2
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 1.8e-57 227.6 426 37.8
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 1.1e-54 218.4 325 42.5
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 2.4e-54 217.2 427 38.6
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 2.4e-54 217.2 419 37.5
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 9.0e-54 215.3 454 37.4
Psat3g183880 Pisum sativum HOM05D000564 ORTHO05D005996 7.6e-53 212.2 163 71.8
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 4.2e-51 206.5 442 35.1
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 1.7e-44 184.5 176 56.8
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 4.6e-42 176.4 184 53.3
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 5.1e-41 172.9 173 55.5
Dinv17121 Davidia involucrata HOM05D005905 ORTHO05D005996 4.1e-38 163.3 263 40.3
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 1.1e-35 155.2 260 39.6
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 3.9e-33 146.7 181 47.0
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.1e-30 138.7 426 29.1
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 2.0e-29 134.4 207 39.6
arahy.Tifrunner.gnm1.ann1.F86J4F Arachis hypogaea HOM05D005905 ORTHO05D005996 5.0e-28 129.8 233 38.6
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 1.2e-26 125.2 188 42.0
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 1.2e-26 125.2 188 42.0
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 1.4e-25 121.7 194 39.7
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.7e-25 119.4 193 39.9
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 2.0e-24 117.9 137 49.6
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 3.3e-24 117.1 197 37.6
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 5.7e-24 116.3 427 26.5
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 1.7e-23 114.8 252 33.3
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 2.4e-22 110.9 202 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 5.3e-22 109.8 426 26.8
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 2.0e-21 107.8 175 36.6
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 3.2e-19 100.5 190 36.3
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 1.2e-18 98.6 175 37.1
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 3.6e-18 97.1 194 31.4
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 1.8e-17 94.7 126 41.3
Atru.chr3.1427 Acer truncatum HOM05D005905 ORTHO05D005996 1.1e-16 92.0 149 39.6
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.2e-13 82.0 192 30.7
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.5e-12 76.3 191 31.9
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 6.5e-12 76.3 147 36.7
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.4e-09 68.6 174 29.9
ATR1089G052 Amborella trichopoda HOM05D005905 ORTHO05D005996 7.5e-08 62.8 184 30.4
Potri.018G145524 Populus trichocarpa HOM05D005905 ORTHO05D005996 6.3e-07 59.7 138 33.3


User provided reference genes

Program Settings