Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.0e-250 868.6 436 100.0
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.3e-244 849.4 425 100.0
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 4.7e-191 671.4 442 80.5
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 6.8e-190 667.5 454 78.6
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 1.3e-188 663.3 437 79.4
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 7.3e-168 594.3 437 71.4
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 1.2e-162 577.0 440 68.2
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 1.9e-155 553.1 438 67.8
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 7.8e-154 547.7 442 67.0
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 3.9e-153 545.4 424 68.4
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 3.5e-146 522.3 441 61.9
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 5.1e-145 518.5 440 65.0
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 1.2e-133 480.7 428 63.3
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 6.1e-98 362.1 437 49.7
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 5.0e-92 342.4 425 47.3
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 6.5e-92 342.0 430 47.4
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 2.7e-90 336.7 447 45.4
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 1.0e-89 334.7 423 47.8
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 1.0e-89 334.7 447 45.2
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.4e-89 334.3 460 45.4
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 6.8e-89 332.0 436 47.0
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 2.6e-88 330.1 449 46.5
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 5.7e-88 328.9 448 46.0
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 5.7e-88 328.9 444 46.2
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 1.8e-86 323.9 449 45.0
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 2.3e-84 317.0 435 44.4
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 2.9e-84 316.6 444 45.5
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 3.8e-84 316.2 441 45.6
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 6.6e-84 315.5 437 45.8
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 2.5e-83 313.5 440 44.8
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 2.5e-83 313.5 434 44.2
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 4.2e-83 312.8 432 45.1
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 2.8e-82 310.1 431 44.8
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 8.0e-82 308.5 426 43.9
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 1.4e-81 307.8 436 44.3
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 1.4e-81 307.8 451 44.1
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 4.0e-81 306.2 440 44.3
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 6.8e-81 305.4 439 43.7
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 1.2e-80 304.7 437 45.1
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 1.2e-80 304.7 437 45.1
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 1.5e-80 304.3 434 43.5
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 2.6e-80 303.5 436 44.3
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 4.4e-80 302.8 452 43.1
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 1.7e-79 300.8 438 45.7
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 1.7e-79 300.8 448 42.6
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 6.3e-79 298.9 438 43.4
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 8.3e-79 298.5 443 43.6
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 3.5e-77 293.1 455 43.3
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 4.6e-77 292.7 437 41.4
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 1.0e-76 291.6 438 41.1
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 1.3e-76 291.2 440 42.0
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 1.3e-76 291.2 440 42.0
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 2.9e-76 290.0 428 44.4
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 5.0e-76 289.3 466 40.8
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 6.6e-76 288.9 459 42.3
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 8.6e-76 288.5 439 40.1
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 1.1e-75 288.1 438 40.6
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 4.3e-75 286.2 463 39.1
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 7.3e-75 285.4 442 41.4
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 9.5e-75 285.0 416 44.0
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 1.6e-74 284.3 441 42.4
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 2.1e-74 283.9 438 40.9
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 3.6e-74 283.1 417 43.4
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 6.1e-74 282.3 449 42.1
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 8.0e-74 282.0 405 43.7
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 5.8e-72 275.8 469 41.2
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 9.8e-72 275.0 464 41.2
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 4.9e-71 272.7 416 42.1
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 8.3e-71 271.9 452 42.0
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 1.4e-70 271.2 439 40.3
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 1.9e-70 270.8 445 41.6
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 3.2e-70 270.0 448 41.7
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 3.2e-70 270.0 458 41.7
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 4.6e-69 266.2 461 40.3
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 3.9e-68 263.1 396 43.4
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 8.6e-68 261.9 425 42.4
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 1.5e-67 261.2 461 40.1
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 4.3e-67 259.6 419 41.3
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 7.3e-67 258.8 419 40.3
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 2.1e-66 257.3 470 38.1
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 2.8e-66 256.9 484 38.0
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 1.1e-65 255.0 450 40.4
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 1.8e-65 254.2 452 38.7
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 1.2e-64 251.5 427 41.0
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 2.9e-63 246.9 443 40.2
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 2.4e-62 243.8 451 37.9
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 4.1e-62 243.0 438 40.0
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 4.1e-62 243.0 206 62.1
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.7e-61 240.4 442 38.5
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 1.0e-60 238.4 422 38.2
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 3.0e-60 236.9 442 39.1
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.1e-59 235.0 420 38.6
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 2.8e-58 230.3 420 38.3
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 2.3e-57 227.3 409 36.2
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 2.3e-57 227.3 426 37.8
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 1.1e-54 218.4 325 42.5
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 3.2e-54 216.9 427 38.6
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 3.2e-54 216.9 419 37.5
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 1.2e-53 214.9 499 36.1
Psat3g183880 Pisum sativum HOM05D000564 ORTHO05D005996 7.8e-53 212.2 163 71.8
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 5.6e-51 206.1 442 35.1
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 1.7e-44 184.5 176 56.8
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 4.8e-42 176.4 184 53.3
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 5.3e-41 172.9 173 55.5
Dinv17121 Davidia involucrata HOM05D005905 ORTHO05D005996 5.4e-38 162.9 263 40.3
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 1.1e-35 155.2 260 39.6
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 4.0e-33 146.7 181 47.0
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.1e-30 138.7 426 29.1
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 2.1e-29 134.4 207 39.6
arahy.Tifrunner.gnm1.ann1.F86J4F Arachis hypogaea HOM05D005905 ORTHO05D005996 5.1e-28 129.8 233 38.6
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 1.3e-26 125.2 188 42.0
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 1.3e-26 125.2 188 42.0
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 1.4e-25 121.7 194 39.7
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.9e-25 119.4 193 39.9
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 1.5e-24 118.2 267 33.7
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 2.0e-24 117.9 137 49.6
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.4e-24 117.1 442 27.1
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 3.4e-24 117.1 197 37.6
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 2.5e-22 110.9 202 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 5.5e-22 109.8 426 26.8
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 2.1e-21 107.8 175 36.6
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 3.3e-19 100.5 190 36.3
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 1.3e-18 98.6 175 37.1
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 3.7e-18 97.1 194 31.4
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 1.8e-17 94.7 126 41.3
Atru.chr3.1427 Acer truncatum HOM05D005905 ORTHO05D005996 1.5e-16 91.7 149 39.6
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.2e-13 82.0 192 30.7
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.7e-12 76.3 191 31.9
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 6.7e-12 76.3 147 36.7
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.4e-09 68.6 174 29.9
ATR1089G052 Amborella trichopoda HOM05D005905 ORTHO05D005996 5.3e-09 66.6 195 30.3
Potri.018G145524 Populus trichocarpa HOM05D005905 ORTHO05D005996 6.5e-07 59.7 138 33.3


User provided reference genes

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