Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 0.0e+00 1570.4 843 100.0
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 0.0e+00 1269.6 869 80.4
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 0.0e+00 1213.0 880 77.4
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 0.0e+00 1201.4 858 78.2
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 3.1e-300 1035.0 836 69.0
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 3.1e-300 1035.0 847 68.5
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 2.2e-298 1028.9 838 68.6
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.5e-289 999.6 834 66.8
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.1e-263 913.7 844 62.9
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 8.9e-263 910.6 845 62.0
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 4.4e-254 881.7 859 60.4
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 2.2e-229 799.7 779 61.9
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 3.6e-203 712.6 818 53.7
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 5.3e-199 698.7 837 52.4
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 5.3e-199 698.7 798 53.5
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.0e-198 696.8 837 52.3
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 7.7e-198 694.9 838 51.7
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 5.0e-197 692.2 826 53.0
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.2e-195 687.6 821 52.1
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 6.7e-194 681.8 830 51.6
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 3.3e-193 679.5 830 51.4
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 9.7e-193 677.9 838 51.7
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 2.0e-190 670.2 901 47.7
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.0e-189 667.9 829 50.3
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 5.5e-188 662.1 863 49.9
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 7.2e-188 661.8 844 49.4
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.1e-187 660.2 829 50.1
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 8.0e-187 658.3 832 50.7
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.0e-186 657.9 826 50.6
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.0e-186 656.0 850 49.6
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.5e-185 654.1 860 50.2
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.3e-184 651.0 813 51.5
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 6.3e-184 648.7 817 50.1
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.4e-183 647.5 842 48.9
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 9.1e-183 644.8 825 50.3
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 8.5e-181 638.3 853 49.0
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.5e-177 627.5 836 49.4
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 7.5e-177 625.2 834 48.1
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 9.8e-177 624.8 834 48.1
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 2.2e-176 623.6 835 48.5
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 2.4e-175 620.2 837 48.4
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.1e-175 619.8 801 47.9
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.5e-174 615.9 815 48.1
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.7e-173 614.0 807 48.8
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 3.8e-173 612.8 813 49.8
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 5.0e-173 612.5 809 48.1
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 5.0e-173 612.5 807 48.8
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 8.6e-173 611.7 841 48.2
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.5e-172 610.9 823 48.4
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 4.2e-172 609.4 833 46.5
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 5.5e-172 609.0 809 48.8
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.0e-170 604.7 846 48.6
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.4e-170 604.4 851 48.2
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 2.6e-169 600.1 818 46.9
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 5.7e-169 599.0 807 48.0
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.3e-168 597.8 823 47.3
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 6.3e-168 595.5 788 47.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 2.4e-167 593.6 805 47.6
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 4.1e-167 592.8 805 47.1
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.5e-166 589.3 820 47.2
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.9e-166 589.0 836 47.1
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 5.9e-166 589.0 844 46.6
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.3e-165 587.0 820 47.0
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 5.6e-164 582.4 820 43.9
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 7.3e-164 582.0 847 46.6
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 2.8e-163 580.1 494 65.4
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 3.6e-163 579.7 798 46.9
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.0e-162 578.2 856 44.7
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.3e-162 577.0 814 46.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 4.0e-162 576.2 824 45.8
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.7e-160 570.9 804 47.4
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.1e-159 568.2 692 51.3
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 3.2e-159 566.6 787 47.6
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 7.0e-159 565.5 814 46.8
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.0e-158 563.9 831 45.2
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 6.0e-158 562.4 811 46.2
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.3e-157 561.2 686 51.7
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 1.9e-156 557.4 803 46.2
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 9.5e-156 555.1 825 44.7
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 1.2e-155 554.7 824 45.6
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 6.8e-154 548.9 805 45.0
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 6.8e-154 548.9 846 43.4
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 4.9e-152 542.7 834 44.8
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 6.4e-152 542.3 833 43.7
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 4.6e-150 536.2 824 45.0
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 6.6e-149 532.3 820 42.8
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 2.5e-148 530.4 831 43.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 4.3e-148 529.6 820 42.8
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.2e-145 521.5 810 43.2
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.8e-145 519.2 700 49.3
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 5.8e-145 519.2 810 43.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 2.9e-144 516.9 767 44.9
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.4e-143 514.6 821 45.4
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 3.2e-143 513.5 830 43.1
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 4.1e-143 513.1 815 43.8
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.8e-138 497.7 525 55.0
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 9.2e-135 485.3 850 42.8
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.7e-133 481.1 788 43.3
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 1.6e-131 474.6 801 43.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 4.6e-126 456.4 815 41.5
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.3e-125 454.9 732 44.9
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.4e-119 434.1 890 38.4
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 6.0e-110 402.9 903 38.0
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 1.1e-108 398.7 905 36.9
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 2.1e-107 394.4 878 36.2
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.1e-106 392.1 810 40.0
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.2e-105 388.7 789 38.8
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 2.9e-96 357.5 864 35.5
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.1e-92 345.5 502 45.2
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 4.8e-91 340.1 502 45.0
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.5e-81 307.0 594 39.6
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 1.9e-79 301.6 793 33.5
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.3e-72 278.9 170 82.4
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.4e-66 258.8 246 57.3
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 5.0e-64 250.4 562 34.0
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.8e-58 231.9 490 39.2
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.0e-57 228.4 194 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 1.5e-52 212.2 823 29.0
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 2.7e-49 201.4 835 26.0
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 9.5e-47 193.0 251 46.6
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 8.6e-40 169.9 483 33.7
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 6.8e-37 160.2 377 34.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.3e-35 156.0 678 28.9
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.7e-35 155.6 117 65.8
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 2.9e-35 154.8 170 48.2
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.9e-23 115.5 230 37.4
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.9e-23 115.5 162 43.8
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 8.1e-14 83.6 95 48.4
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.9e-11 75.1 116 47.4
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 8.4e-11 73.6 78 44.9
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 3.5e-09 68.2 49 65.3
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 2.1e-06 58.9 112 40.2
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 2.1e-06 58.9 175 29.7


User provided reference genes

Program Settings