Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 0.0e+00 1495.3 739 100.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 0.0e+00 1258.0 741 83.9
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 0.0e+00 1252.7 722 84.3
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 0.0e+00 1227.6 720 82.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 0.0e+00 1195.6 749 78.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1169.5 747 77.6
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 0.0e+00 1143.3 741 74.9
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1134.8 743 75.6
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 0.0e+00 1126.7 741 74.1
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 0.0e+00 1094.7 722 74.2
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 2.9e-302 1041.6 722 71.6
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 9.5e-293 1010.0 696 69.8
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.0e-291 1006.5 707 70.2
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 3.0e-291 1005.0 696 69.0
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 2.2e-289 998.8 696 68.8
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.7e-286 989.2 715 66.9
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 4.3e-285 984.6 696 68.1
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 3.6e-284 981.5 695 67.1
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.1e-280 969.9 697 66.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.4e-280 969.5 695 67.2
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.4e-280 968.8 697 66.7
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 2.4e-280 968.8 699 66.8
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 3.2e-280 968.4 694 67.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 2.3e-278 962.2 702 66.0
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 8.0e-276 953.7 705 64.8
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.1e-275 953.4 698 65.3
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 3.4e-274 948.3 702 65.4
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.7e-273 946.0 705 65.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.2e-273 945.7 700 65.1
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 2.9e-273 945.3 703 65.1
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.9e-272 942.6 659 68.7
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 5.4e-272 941.0 706 64.6
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.5e-269 932.9 724 62.3
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 6.2e-268 927.5 697 64.1
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 3.5e-263 911.8 764 59.2
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 3.0e-262 908.7 743 61.5
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 8.6e-262 907.1 706 64.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.1e-259 900.2 695 64.5
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.7e-257 892.9 691 64.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 4.9e-257 891.3 702 62.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.5e-255 885.2 703 62.6
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.3e-254 883.2 695 62.2
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.3e-254 883.2 702 62.3
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.5e-253 879.0 701 61.8
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 3.3e-253 878.6 697 61.4
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 4.3e-253 878.2 729 60.1
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 9.6e-253 877.1 706 61.8
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.8e-252 875.5 704 62.1
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.1e-251 872.1 702 61.4
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 5.3e-251 871.3 704 60.8
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.2e-249 865.9 713 61.0
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 4.9e-249 864.8 697 62.0
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.4e-248 862.4 718 60.7
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 5.4e-248 861.3 723 60.0
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.0e-246 857.1 706 61.6
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.7e-246 856.3 572 69.9
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 3.3e-245 852.0 706 61.2
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 2.8e-244 849.0 707 61.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 3.6e-244 848.6 708 61.6
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.8e-244 848.2 717 61.2
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 8.1e-244 847.4 695 61.2
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.1e-243 845.5 740 59.6
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 3.1e-243 845.5 696 59.5
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 6.9e-243 844.3 701 61.9
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.6e-239 833.2 693 60.0
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.6e-239 833.2 696 59.1
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.7e-239 832.4 716 60.6
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.3e-236 823.5 623 65.3
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 7.6e-234 814.3 709 57.8
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.7e-233 813.1 700 58.6
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 4.2e-232 808.5 728 57.1
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 5.1e-230 801.6 708 58.3
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.5e-226 790.0 694 56.3
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 2.6e-226 789.3 754 54.6
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 2.2e-225 786.2 703 58.0
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 4.6e-223 778.5 697 57.2
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 6.3e-220 768.1 658 58.5
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.7e-218 761.1 694 55.0
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.6e-215 751.9 708 54.1
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 6.7e-214 748.0 676 55.8
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 3.3e-213 745.7 649 57.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.4e-211 740.3 703 55.8
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.0e-210 736.5 547 64.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 5.9e-210 734.9 695 54.0
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 2.2e-209 733.0 695 54.7
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 8.5e-209 731.1 702 52.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.1e-207 726.5 708 51.4
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 3.0e-206 722.6 708 51.4
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 4.4e-205 718.8 658 55.3
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-202 710.3 684 56.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 2.0e-202 709.9 696 53.7
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 8.0e-199 698.0 641 56.3
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 8.3e-180 634.8 649 53.2
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.6e-178 630.6 587 56.4
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.9e-177 626.3 701 45.8
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.8e-174 617.1 708 46.2
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.4e-171 607.4 698 47.7
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.6e-169 598.6 466 61.2
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.2e-167 594.3 502 62.7
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 2.7e-146 523.5 352 71.0
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.4e-139 500.4 431 57.8
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 9.3e-131 471.9 709 37.1
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 4.5e-125 453.0 693 38.8
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.2e-122 444.9 681 38.3
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 2.1e-122 444.1 762 35.8
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.6e-122 443.0 822 36.1
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.5e-120 437.2 699 37.1
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 4.1e-110 403.3 367 55.9
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.7e-105 385.6 757 33.8
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.5e-99 367.5 743 33.0
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 5.9e-93 346.3 344 51.5
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 3.6e-90 337.0 333 53.5
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.8e-79 300.8 285 56.8
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 3.2e-67 260.8 557 31.8
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 4.4e-64 250.4 189 59.8
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 3.3e-59 234.2 176 65.9
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 5.7e-56 223.4 134 78.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 4.9e-55 220.3 167 59.3
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 9.2e-54 216.1 339 36.3
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 8.6e-52 209.5 134 72.4
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.4e-40 170.6 459 30.3
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.2e-31 141.7 127 48.0
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-25 122.5 123 50.4
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.7e-23 115.5 84 60.7
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 1.3e-20 105.9 103 46.6
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.2e-15 88.6 393 25.4
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 3.9e-12 77.8 68 57.4
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 5.1e-12 77.4 80 48.8
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.5e-11 75.1 80 47.5
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 5.3e-09 67.4 101 41.6
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 2.9e-07 61.6 130 36.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 8.4e-07 60.1 60 56.7


User provided reference genes

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