Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 1.9e-162 575.9 301 100.0
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 1.1e-146 523.5 300 90.3
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 7.1e-146 520.8 300 86.7
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 6.0e-129 464.5 300 82.3
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 8.2e-126 454.1 290 77.6
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 3.2e-122 442.2 300 75.3
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.2e-121 440.3 296 75.7
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 4.6e-121 438.3 296 75.0
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 3.7e-118 428.7 303 74.3
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 4.5e-116 421.8 304 72.4
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 6.5e-115 417.9 306 72.5
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 8.5e-115 417.5 304 73.0
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.5e-114 416.0 300 69.7
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 3.2e-114 415.6 300 69.3
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 4.2e-114 415.2 300 70.3
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.2e-113 413.7 294 70.1
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 2.1e-113 412.9 303 69.3
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 3.9e-112 408.7 302 70.2
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 8.8e-112 407.5 287 71.4
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 1.5e-111 406.8 305 70.5
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 4.3e-111 405.2 310 70.0
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 4.8e-110 401.7 267 74.2
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 8.2e-110 401.0 291 69.8
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 1.4e-109 400.2 293 71.7
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 1.4e-109 400.2 295 69.5
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 4.1e-109 398.7 292 70.5
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 5.3e-109 398.3 305 69.5
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 1.2e-108 397.1 305 68.2
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 2.6e-108 396.0 294 70.7
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 7.7e-108 394.4 302 69.5
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 1.7e-107 393.3 302 70.2
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 2.9e-107 392.5 292 69.9
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 6.5e-107 391.3 296 68.2
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 8.5e-107 391.0 296 68.2
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.9e-106 389.8 300 68.0
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 2.5e-106 389.4 285 68.4
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 3.2e-106 389.0 290 68.6
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 7.2e-106 387.9 287 68.6
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 9.4e-106 387.5 301 67.1
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 1.2e-105 387.1 302 67.5
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 2.1e-105 386.3 297 67.7
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 2.7e-105 386.0 305 67.5
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.7e-105 385.2 309 64.7
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.4e-104 383.6 298 68.1
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.8e-104 383.3 289 68.9
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 2.3e-104 382.9 286 69.9
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 3.9e-104 382.1 306 66.3
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 1.5e-103 380.2 278 67.6
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 2.0e-103 379.8 296 67.6
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.6e-103 379.4 298 66.4
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 2.6e-103 379.4 308 68.5
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 5.7e-103 378.3 282 67.7
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 9.7e-103 377.5 293 65.5
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 8.2e-102 374.4 270 72.6
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 8.2e-102 374.4 286 65.7
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 1.8e-101 373.2 279 69.5
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 3.1e-101 372.5 295 65.1
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 6.9e-101 371.3 297 64.3
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 9.1e-101 370.9 321 62.6
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.2e-100 370.5 279 67.0
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 1.5e-100 370.2 287 64.8
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 1.5e-100 370.2 291 66.3
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 1.0e-99 367.5 305 65.9
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 1.3e-99 367.1 301 67.4
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.7e-99 366.7 310 66.1
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 3.8e-99 365.5 310 65.5
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 5.0e-99 365.2 324 62.7
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 2.5e-98 362.8 349 56.4
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 5.5e-98 361.7 278 65.5
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.1e-97 359.8 324 61.7
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 4.7e-97 358.6 299 62.2
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 5.2e-96 355.1 289 65.4
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 5.2e-96 355.1 291 63.9
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 5.7e-95 351.7 316 63.0
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 8.2e-94 347.8 298 63.1
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 3.1e-93 345.9 288 64.2
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 7.0e-93 344.7 332 58.7
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 9.1e-93 344.4 290 65.5
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.2e-92 344.0 198 88.9
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 3.8e-91 339.0 289 61.2
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 5.0e-91 338.6 311 60.5
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 1.5e-90 337.0 296 58.4
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 3.2e-90 335.9 237 69.6
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 4.2e-90 335.5 276 63.8
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 1.6e-89 333.6 298 59.1
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 2.1e-89 333.2 296 60.8
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 1.4e-88 330.5 293 59.4
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 9.7e-87 324.3 290 60.7
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 5.3e-85 318.5 317 59.3
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 2.7e-84 316.2 296 61.1
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.5e-84 315.8 297 57.2
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 1.0e-83 314.3 287 61.3
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 2.7e-81 306.2 298 57.4
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.7e-81 305.4 243 69.1
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 3.0e-80 302.8 303 56.1
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 5.4e-77 292.0 301 53.2
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 2.9e-75 286.2 294 55.1
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.3e-72 276.6 195 68.7
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 2.3e-72 276.6 296 54.1
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 3.0e-72 276.2 232 59.9
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 3.5e-68 262.7 182 69.8
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 3.2e-61 239.6 181 68.5
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 5.6e-58 228.8 303 48.8
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 3.1e-56 223.0 307 45.0
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 2.6e-55 219.9 205 57.1
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 5.8e-55 218.8 141 73.0
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 4.9e-54 215.7 166 66.9
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 5.1e-51 205.7 126 79.4
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 1.5e-50 204.1 171 64.3
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 4.0e-48 196.1 169 65.7
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 7.5e-47 191.8 312 41.3
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 9.9e-47 191.4 220 50.5
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.1e-44 183.7 291 37.5
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 3.5e-44 183.0 278 36.7
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.6e-42 175.6 141 63.8
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 7.3e-42 175.3 159 59.1
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 9.5e-42 174.9 307 40.4
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.2e-38 163.7 143 65.7
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 3.0e-35 153.3 103 72.8
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 6.6e-35 152.1 103 74.8
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 1.9e-34 150.6 89 79.8
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.4e-32 143.7 134 58.2
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.3e-25 121.3 85 69.4
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.1e-21 108.2 109 61.5
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.0e-19 101.7 115 50.4
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 1.8e-19 100.9 234 34.6
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 2.3e-19 100.5 110 53.6
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 3.9e-19 99.8 82 67.1
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 4.8e-17 92.8 106 56.6
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 1.2e-15 88.2 302 29.8
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 5.8e-15 85.9 104 50.0
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 3.5e-12 76.6 84 54.8
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 8.4e-06 55.5 213 24.9


User provided reference genes

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