Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.0e-142 510.0 247 100.0
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 4.2e-120 434.9 255 85.1
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 1.3e-113 413.3 254 83.1
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 2.7e-111 405.6 258 78.7
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 3.3e-101 372.1 255 70.6
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 4.4e-101 371.7 255 72.2
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 3.7e-100 368.6 253 71.5
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 6.3e-100 367.9 251 71.3
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 5.9e-98 361.3 236 74.6
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 1.3e-97 360.1 236 74.2
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 5.0e-97 358.2 229 74.2
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 9.8e-93 344.0 247 66.4
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.2e-90 337.0 236 69.1
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 1.6e-90 336.7 234 68.4
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 2.2e-89 332.8 236 66.5
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 3.8e-89 332.0 207 72.5
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 6.5e-89 331.3 215 69.3
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 1.5e-88 330.1 204 73.5
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 4.2e-88 328.6 236 64.4
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 7.2e-88 327.8 209 71.3
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 1.2e-87 327.0 220 69.5
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.2e-87 327.0 237 65.4
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 1.6e-87 326.6 216 74.1
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.6e-87 326.6 246 63.4
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 2.1e-87 326.2 231 65.4
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 6.1e-87 324.7 214 68.2
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 6.1e-87 324.7 239 64.4
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 1.0e-86 323.9 239 64.0
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 1.4e-86 323.6 251 64.1
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 1.4e-86 323.6 242 64.0
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 3.0e-86 322.4 214 70.6
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 2.6e-85 319.3 244 61.5
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 9.8e-85 317.4 246 61.4
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 1.3e-84 317.0 203 70.0
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.7e-84 316.6 200 71.0
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.7e-84 316.6 200 71.0
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 1.7e-84 316.6 225 64.4
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.7e-84 316.6 243 64.6
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.7e-84 316.6 227 64.3
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 2.2e-84 316.2 217 67.7
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 2.8e-84 315.8 197 72.1
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 8.3e-84 314.3 217 66.8
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 1.8e-83 313.2 247 61.1
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.8e-83 313.2 235 65.5
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 2.4e-83 312.8 227 63.9
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 2.4e-83 312.8 240 62.5
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 4.1e-83 312.0 223 65.5
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 4.1e-83 312.0 222 64.4
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 4.1e-83 312.0 235 62.6
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 7.0e-83 311.2 223 64.6
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 7.0e-83 311.2 211 68.2
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 1.2e-82 310.5 241 61.4
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 2.0e-82 309.7 222 64.0
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 3.5e-82 308.9 221 65.2
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 4.5e-82 308.5 238 62.2
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 7.7e-82 307.8 245 60.8
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 1.0e-81 307.4 228 63.2
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 1.3e-81 307.0 220 63.6
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.7e-81 306.6 197 67.5
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.7e-81 306.6 197 68.0
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 2.9e-81 305.8 215 65.6
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 2.9e-81 305.8 210 65.7
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 5.0e-81 305.1 197 67.5
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 5.0e-81 305.1 222 62.6
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 3.3e-80 302.4 212 65.6
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 7.2e-80 301.2 213 64.3
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 2.1e-79 299.7 221 62.4
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 3.6e-79 298.9 200 66.0
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 3.0e-78 295.8 220 61.4
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 4.0e-78 295.4 201 63.7
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 5.2e-78 295.0 215 62.3
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 7.5e-77 291.2 200 65.5
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 7.5e-77 291.2 280 52.5
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 9.8e-77 290.8 237 57.4
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 4.9e-76 288.5 227 59.0
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 1.8e-75 286.6 225 60.0
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 4.1e-75 285.4 208 62.0
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 2.3e-73 279.6 182 70.3
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 2.3e-70 269.6 202 61.9
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 8.9e-70 267.7 197 62.4
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 2.0e-69 266.5 197 62.4
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 2.0e-69 266.5 176 69.9
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.4e-69 265.8 169 70.4
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 1.4e-67 260.4 246 54.5
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.4e-67 260.4 209 57.9
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 1.9e-64 250.0 195 57.4
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 2.1e-63 246.5 242 47.5
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 8.1e-63 244.6 167 64.7
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 8.9e-62 241.1 176 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 3.7e-60 235.7 198 54.0
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 8.3e-60 234.6 194 60.3
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 3.2e-59 232.6 133 77.4
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 2.7e-58 229.6 201 52.7
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 3.5e-58 229.2 148 69.6
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 2.1e-55 219.9 201 52.7
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 2.1e-55 219.9 174 60.9
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 1.5e-48 197.2 128 68.8
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.1e-47 193.4 237 45.1
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 1.1e-46 191.0 102 81.4
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 4.0e-46 189.1 127 68.5
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 7.6e-45 184.9 198 45.5
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 3.5e-42 176.0 145 58.6
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 2.3e-41 173.3 222 40.1
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.7e-36 157.1 182 41.8
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 4.0e-30 136.0 93 63.4
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 9.0e-30 134.8 80 75.0
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 4.8e-23 112.5 88 58.0
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.8e-22 110.5 92 60.9
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 7.6e-21 105.1 69 68.1
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 1.9e-19 100.5 55 80.0
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 6.7e-17 92.0 96 47.9
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 6.7e-17 92.0 57 68.4
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 9.0e-14 81.6 92 47.8
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 9.0e-14 81.6 92 47.8
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 9.0e-14 81.6 92 47.8
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 9.0e-14 81.6 92 47.8
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.5e-13 80.9 76 47.4
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 2.6e-13 80.1 91 47.3
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 7.6e-13 78.6 66 60.6
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.0e-09 68.2 65 46.2
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 1.1e-06 58.2 31 71.0


User provided reference genes

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