Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 0.0e+00 1228.8 614 100.0
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 1.9e-307 1058.5 611 86.1
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 9.0e-305 1049.7 614 86.3
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.9e-283 978.8 613 79.8
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 2.5e-278 961.8 605 79.2
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 3.5e-277 958.0 605 79.0
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 5.7e-275 950.7 607 77.8
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 4.1e-273 944.5 605 77.2
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 7.6e-272 940.3 616 76.1
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.4e-262 909.4 612 75.7
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 2.0e-224 782.7 461 84.8
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 3.7e-218 761.9 631 61.2
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 3.2e-217 758.8 606 63.9
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.0e-216 756.1 638 61.3
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 7.8e-216 754.2 640 61.7
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.9e-215 751.9 641 59.8
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.5e-214 750.0 639 59.8
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.5e-214 750.0 639 59.8
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 9.5e-214 747.3 640 59.4
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.2e-213 746.9 617 64.0
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.2e-213 746.9 640 60.2
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 3.6e-213 745.3 639 60.9
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.2e-211 740.3 644 59.3
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 7.5e-211 737.6 611 61.4
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.1e-209 733.8 632 59.0
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 2.4e-209 732.6 504 71.0
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 7.0e-209 731.1 633 60.0
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 1.2e-208 730.3 629 59.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 2.7e-208 729.2 612 60.0
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 6.0e-208 728.0 638 58.8
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.3e-207 726.9 612 58.5
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.5e-206 722.6 612 59.8
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 9.5e-206 720.7 541 66.7
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 6.2e-205 718.0 612 59.6
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.1e-204 717.2 633 57.0
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 3.1e-204 715.7 631 57.4
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.0e-203 713.0 614 59.0
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 2.0e-203 713.0 611 60.1
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 4.4e-203 711.8 600 60.8
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 9.9e-203 710.7 640 56.7
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 2.2e-202 709.5 640 56.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 4.9e-202 708.4 635 57.8
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.4e-201 706.8 598 58.4
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 4.1e-201 705.3 639 57.3
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.7e-199 699.9 653 56.2
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.1e-198 697.2 608 60.0
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 1.9e-198 696.4 619 58.2
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 3.6e-197 692.2 630 56.7
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.8e-196 689.9 619 57.5
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 2.4e-196 689.5 615 57.6
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 3.1e-196 689.1 619 57.0
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 8.9e-196 687.6 624 56.7
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.2e-195 687.2 638 56.7
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 3.4e-195 685.6 603 57.4
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 3.4e-195 685.6 635 56.7
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 4.4e-195 685.3 634 56.3
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 7.6e-195 684.5 612 57.5
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 3.8e-194 682.2 613 57.7
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 2.4e-193 679.5 633 55.5
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.7e-192 676.0 618 56.5
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 1.3e-191 673.7 611 56.6
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 3.0e-191 672.5 628 56.2
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 4.3e-190 668.7 619 56.9
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 7.3e-190 667.9 440 73.0
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 7.3e-190 667.9 620 56.3
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 2.1e-189 666.4 608 56.7
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 5.3e-188 661.8 618 56.1
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 5.3e-188 661.8 614 56.4
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 1.3e-186 657.1 561 60.1
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.9e-186 656.0 611 57.1
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 7.1e-185 651.4 494 64.8
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 2.1e-184 649.8 621 56.0
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 2.5e-182 642.9 610 56.6
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 2.1e-181 639.8 612 54.9
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 8.1e-181 637.9 660 52.7
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 2.2e-178 629.8 441 68.9
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 2.1e-176 623.2 612 53.9
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.3e-175 620.5 484 63.0
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.3e-175 620.5 484 63.0
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 1.9e-174 616.7 610 55.6
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 7.1e-169 598.2 677 49.0
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 7.9e-168 594.7 608 52.3
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 2.3e-167 593.2 490 60.4
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.5e-166 589.7 556 56.5
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 4.3e-166 589.0 402 71.1
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 1.3e-165 587.4 386 72.5
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 1.3e-162 577.4 534 54.3
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.9e-158 563.5 539 55.5
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.8e-156 557.0 386 68.4
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.8e-156 557.0 531 54.2
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.4e-155 552.7 391 68.0
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.4e-155 552.7 391 68.0
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 8.5e-154 548.1 387 69.3
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.2e-153 546.2 517 54.9
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 3.6e-152 542.7 513 54.6
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.0e-151 541.2 387 68.7
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.8e-143 513.8 525 52.2
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 8.8e-143 511.5 448 59.4
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.8e-141 506.5 561 48.5
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.8e-140 503.8 594 47.5
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.5e-139 499.2 455 54.1
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.4e-132 476.9 461 55.7
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 9.1e-132 474.9 460 54.1
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 5.2e-127 459.1 397 58.4
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 3.5e-123 446.4 453 51.9
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 7.2e-121 438.7 488 47.5
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.0e-119 434.9 341 61.3
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 7.7e-115 418.7 295 70.8
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 6.6e-114 415.6 467 48.2
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 3.3e-113 413.3 535 43.7
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 7.2e-113 412.1 530 42.8
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.8e-111 407.5 469 43.5
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 8.9e-103 378.6 257 70.4
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 7.8e-99 365.5 495 38.6
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 4.9e-93 346.3 303 54.5
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 9.2e-92 342.0 479 41.1
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.6e-91 339.7 316 56.6
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.1e-84 316.6 276 55.4
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-81 308.1 385 43.6
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.7e-69 268.1 193 63.7
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.1e-66 256.5 503 32.6
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.2e-61 241.1 160 70.0
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.8e-50 204.9 195 49.2
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 3.3e-49 200.7 133 69.9
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 5.8e-46 189.9 252 46.8
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 1.8e-42 178.3 196 55.1
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 9.7e-41 172.6 252 40.1
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.0e-37 162.5 124 59.7
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.9e-36 158.3 124 58.1
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 7.4e-33 146.4 225 44.4
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.7e-32 145.2 121 56.2
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 4.2e-28 130.6 124 54.8
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 7.0e-23 113.2 220 35.5
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 4.2e-20 104.0 88 56.8
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.4e-15 89.0 98 49.0
Psat4g088520 Pisum sativum HOM05D005279 ORTHO05D044343 1.6e-14 85.5 78 62.8
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.0e-13 82.8 67 59.7
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.1e-11 75.1 91 44.0
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 5.4e-07 60.5 67 50.7
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 5.4e-07 60.5 67 50.7


User provided reference genes

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