Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.3e-141 504.6 248 100.0
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.4e-128 463.0 269 84.8
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 6.1e-127 457.6 269 83.6
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.8e-126 456.1 269 82.9
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 3.3e-125 451.8 269 82.5
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 5.7e-125 451.1 269 82.2
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-124 449.1 269 82.2
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 4.5e-122 441.4 269 79.9
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.0e-121 440.3 267 80.9
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.3e-121 439.9 269 79.6
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 5.0e-121 438.0 268 79.1
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.2e-120 434.9 262 80.2
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 7.4e-117 424.1 267 76.0
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.1e-115 418.3 269 75.1
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 5.3e-115 417.9 269 75.1
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-114 416.4 269 74.7
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 4.5e-114 414.8 268 73.5
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.9e-113 412.1 254 76.8
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 3.8e-113 411.8 260 75.8
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 8.5e-113 410.6 269 73.6
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 4.2e-112 408.3 269 73.6
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 7.2e-112 407.5 269 72.9
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 7.2e-112 407.5 269 72.9
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 9.4e-112 407.1 269 72.9
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.6e-111 406.4 269 72.5
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 6.1e-111 404.4 270 72.6
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.8e-110 402.9 269 72.9
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.8e-110 402.9 269 72.9
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.3e-110 402.5 269 72.5
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.3e-110 402.5 269 72.5
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 3.0e-110 402.1 269 72.9
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.0e-110 401.7 269 71.7
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.5e-109 399.8 269 71.0
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 2.0e-109 399.4 269 71.7
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.0e-109 399.4 270 71.1
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 2.6e-109 399.1 269 71.0
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 4.4e-109 398.3 268 71.6
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 5.7e-109 397.9 269 69.9
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 5.7e-109 397.9 269 70.6
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 7.5e-109 397.5 271 70.8
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 7.5e-109 397.5 281 69.4
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 7.5e-109 397.5 269 71.4
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.2e-108 396.0 269 69.9
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 4.8e-108 394.8 267 70.8
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 8.2e-108 394.0 271 70.5
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.1e-107 393.7 271 70.5
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.4e-107 393.3 269 70.6
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.4e-107 393.3 269 71.0
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 2.4e-107 392.5 269 68.4
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.4e-107 392.5 269 71.0
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 4.1e-107 391.7 269 71.0
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 7.0e-107 391.0 269 69.1
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 9.1e-107 390.6 269 68.8
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 9.1e-107 390.6 270 69.3
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 9.1e-107 390.6 269 71.0
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.2e-106 390.2 269 69.9
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 1.2e-106 390.2 266 70.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.2e-106 390.2 269 70.3
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.6e-106 389.8 274 70.1
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.6e-106 389.8 265 69.4
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 3.5e-106 388.7 269 67.7
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 3.5e-106 388.7 269 68.0
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 4.5e-106 388.3 269 67.7
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 4.5e-106 388.3 269 69.1
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 7.7e-106 387.5 269 68.4
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 7.7e-106 387.5 269 69.1
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.0e-105 387.1 269 68.4
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.3e-105 386.7 269 67.7
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.3e-105 386.7 269 71.4
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.7e-105 386.3 269 68.0
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 6.5e-105 384.4 269 68.4
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.5e-105 384.4 269 68.8
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.5e-105 384.4 269 68.8
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.1e-104 383.6 271 69.0
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.5e-104 383.3 269 67.3
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 2.5e-104 382.5 269 67.3
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.2e-104 381.7 269 67.3
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.5e-104 381.3 269 67.3
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 5.5e-104 381.3 269 67.7
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 5.5e-104 381.3 268 67.9
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 7.2e-104 380.9 270 67.4
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 9.4e-104 380.6 269 67.3
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.4e-104 380.6 269 67.3
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.6e-103 379.8 306 63.7
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 2.1e-103 379.4 268 67.5
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 2.7e-103 379.0 268 67.5
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 2.7e-103 379.0 269 66.5
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 4.7e-103 378.3 269 66.9
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.0e-102 377.1 269 65.8
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 1.4e-102 376.7 270 67.0
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-102 376.7 267 66.7
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.0e-102 375.6 275 66.2
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 4.0e-102 375.2 270 66.7
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.2e-102 374.8 275 65.8
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.8e-102 374.0 275 65.8
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.2e-101 373.6 270 66.7
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 9.8e-101 370.5 244 74.6
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.2e-100 369.4 269 67.7
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.8e-100 368.2 269 67.3
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 4.8e-100 368.2 261 66.3
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 8.3e-100 367.5 286 62.9
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.4e-99 365.9 269 66.9
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 7.0e-99 364.4 267 65.9
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.6e-98 363.2 269 66.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.7e-98 362.5 269 66.2
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 4.5e-98 361.7 269 66.9
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 2.9e-97 359.0 252 71.0
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 2.9e-97 359.0 269 65.1
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 5.0e-97 358.2 269 66.5
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 5.0e-97 358.2 269 64.7
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.6e-97 357.8 258 69.4
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 6.6e-97 357.8 269 63.6
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 8.6e-97 357.5 264 65.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 1.9e-96 356.3 269 63.6
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.5e-96 355.9 269 64.3
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 9.5e-96 354.0 269 64.7
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 4.7e-95 351.7 269 62.5
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 6.1e-95 351.3 269 64.7
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 4.0e-94 348.6 267 62.9
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 5.7e-93 344.7 269 63.2
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-92 343.2 267 62.2
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.7e-92 343.2 268 62.7
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.6e-90 336.7 269 63.9
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.7e-90 335.9 270 60.7
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 4.5e-90 335.1 236 67.8
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.9e-90 334.7 267 60.7
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 5.9e-90 334.7 269 61.3
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-89 333.6 276 57.6
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.8e-89 332.0 270 60.7
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.0e-89 331.6 276 57.6
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.0e-89 331.6 271 60.9
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.6e-89 330.9 270 58.5
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-88 330.5 270 58.5
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-88 329.7 271 59.0
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.9e-88 329.7 270 58.5
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 5.6e-88 328.2 269 60.2
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 9.5e-88 327.4 271 58.7
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-87 327.0 276 57.2
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.6e-87 325.5 271 58.3
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 6.8e-86 321.2 234 65.4
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.0e-85 319.7 208 75.5
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 4.4e-85 318.5 235 66.4
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-83 313.5 270 56.3
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 7.0e-83 311.2 195 74.9
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 7.8e-82 307.8 270 55.2
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-81 307.0 271 56.1
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 8.6e-81 304.3 271 56.5
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 7.3e-80 301.2 249 59.4
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-78 296.6 191 70.2
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.3e-78 296.2 186 72.6
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 2.1e-74 283.1 295 49.2
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 4.6e-74 282.0 217 66.4
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 2.9e-68 262.7 270 51.1
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.9e-59 233.4 127 87.4
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.6e-55 220.3 189 57.7
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.8e-52 209.1 269 40.1
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-51 206.5 130 72.3
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.1e-43 181.0 271 37.3
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 2.1e-42 176.8 141 60.3
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 6.7e-41 171.8 106 82.1
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.7e-41 171.8 181 52.5
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-36 157.5 188 47.9
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 7.1e-35 151.8 88 79.5
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.5e-32 144.1 250 38.8
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.3e-31 141.0 275 33.5
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 3.1e-30 136.3 88 71.6
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.6e-29 133.3 82 75.6
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 3.0e-25 119.8 87 64.4
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-24 117.1 64 87.5
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.2e-20 103.6 78 60.3
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.9e-19 100.5 67 71.6
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 7.9e-18 95.1 67 55.2
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.3e-14 82.4 82 48.8
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 7.2e-11 72.0 49 65.3
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 7.2e-11 72.0 49 65.3
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 7.2e-11 72.0 60 53.3
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 2.7e-10 70.1 65 53.8
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 5.7e-08 62.4 57 56.1
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 9.7e-08 61.6 57 54.4
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 8.2e-07 58.5 50 58.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-06 58.2 44 56.8
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 3.1e-06 56.6 42 61.9


User provided reference genes

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