Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 7.5e-178 627.1 321 100.0
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 6.8e-147 524.2 316 86.1
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 2.8e-140 502.3 318 82.1
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 2.4e-131 472.6 314 77.1
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 2.0e-130 469.5 314 76.4
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 4.5e-130 468.4 314 75.5
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 2.1e-127 459.5 314 75.2
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 9.6e-125 450.7 282 83.7
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.0e-118 430.6 317 70.7
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.1e-115 420.6 314 71.3
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 9.0e-115 417.5 314 70.7
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 7.1e-112 407.9 315 67.3
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 6.3e-92 341.7 313 57.5
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 4.1e-91 339.0 315 61.0
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 7.0e-91 338.2 252 72.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 2.7e-87 326.2 315 59.0
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.4e-86 323.9 313 57.8
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.8e-86 323.6 317 55.8
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.1e-85 320.9 317 55.5
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 2.6e-85 319.7 310 55.8
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 2.2e-84 316.6 316 53.8
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 1.1e-83 314.3 316 54.1
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 1.4e-83 313.9 316 55.4
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.1e-83 312.4 321 54.8
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.5e-82 309.3 284 61.6
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 1.0e-81 307.8 318 56.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.8e-81 305.8 317 52.1
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 6.5e-81 305.1 316 54.7
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.5e-80 303.9 314 53.2
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 4.2e-80 302.4 310 52.9
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 4.2e-80 302.4 311 56.3
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 4.2e-80 302.4 283 59.7
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 7.2e-80 301.6 285 60.0
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.2e-80 301.6 320 53.8
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.2e-79 300.8 322 52.5
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.4e-78 297.4 311 55.6
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 3.0e-78 296.2 311 54.0
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.0e-78 295.8 318 52.8
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 5.2e-78 295.4 315 52.4
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.5e-77 293.9 306 53.6
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.6e-77 293.1 318 52.2
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 3.4e-77 292.7 317 52.4
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.4e-77 292.7 318 52.2
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 7.5e-77 291.6 318 52.2
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 7.5e-77 291.6 311 55.0
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 8.3e-76 288.1 319 53.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-75 287.3 314 51.9
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.8e-75 287.0 321 51.1
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 2.4e-75 286.6 311 53.4
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 5.3e-75 285.4 311 51.1
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 7.0e-75 285.0 318 51.6
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.1e-75 284.6 318 51.6
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 2.7e-74 283.1 313 52.4
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.7e-74 283.1 312 51.9
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 4.5e-74 282.3 310 52.3
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 4.5e-74 282.3 311 51.8
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.7e-73 280.4 337 48.4
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 5.0e-73 278.9 317 51.1
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.1e-72 277.7 337 48.7
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.5e-72 276.6 321 50.5
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.2e-72 276.2 321 48.0
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.2e-72 276.2 321 49.2
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.6e-71 273.9 316 51.6
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 4.7e-71 272.3 312 51.9
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.8e-70 270.4 278 54.0
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.8e-70 270.4 316 49.4
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 6.8e-70 268.5 316 49.1
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 8.8e-70 268.1 282 51.1
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 2.6e-69 266.5 307 50.5
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 3.4e-69 266.2 309 50.5
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 3.4e-69 266.2 311 47.6
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 2.8e-68 263.1 320 49.1
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 4.8e-68 262.3 309 49.8
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 2.4e-67 260.0 305 49.2
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 3.8e-65 252.7 312 47.1
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 6.6e-65 251.9 314 50.0
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.1e-64 251.1 287 51.2
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 2.8e-63 246.5 304 48.4
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 3.6e-63 246.1 316 46.8
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 4.7e-63 245.7 327 46.2
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 5.2e-62 242.3 284 50.7
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.7e-61 238.8 311 47.6
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 7.5e-61 238.4 314 44.9
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 7.5e-61 238.4 307 45.0
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.1e-59 234.6 314 45.9
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.4e-59 234.2 318 46.9
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.4e-59 233.4 320 43.8
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.4e-59 233.4 303 45.5
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 3.2e-59 233.0 312 46.5
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.4e-59 232.3 320 46.9
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.3e-57 227.6 297 44.4
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.0e-57 225.7 317 43.5
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.1e-56 224.6 306 45.1
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 1.9e-56 223.8 319 43.6
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 1.9e-56 223.8 317 43.5
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 9.5e-56 221.5 312 44.6
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.6e-55 220.7 317 43.2
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.1e-55 220.3 294 44.9
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.0e-54 218.0 305 43.6
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.4e-54 217.6 303 43.6
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 2.3e-54 216.9 324 42.3
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 4.4e-53 212.6 265 47.2
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 5.8e-53 212.2 321 43.6
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.9e-52 209.9 297 44.8
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 3.7e-52 209.5 276 45.7
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.4e-52 208.8 275 46.9
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 4.1e-51 206.1 320 44.1
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.4e-51 205.7 278 46.4
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.0e-50 203.8 273 45.1
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 2.0e-50 203.8 266 45.1
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 4.6e-50 202.6 314 42.7
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.6e-50 202.6 308 40.9
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.3e-49 200.3 313 42.2
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-48 197.6 326 41.7
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.2e-47 194.5 309 40.5
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.6e-47 194.1 313 43.5
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 2.1e-47 193.7 313 41.2
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.8e-47 193.4 317 42.6
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 8.0e-47 191.8 283 43.1
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.4e-46 191.0 305 41.3
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 6.8e-46 188.7 307 41.0
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 6.8e-46 188.7 316 37.3
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 6.8e-46 188.7 274 44.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 8.9e-46 188.3 315 40.3
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 3.4e-45 186.4 312 41.3
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.3e-44 184.5 271 43.9
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 2.9e-44 183.3 279 41.2
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 3.7e-44 183.0 308 40.9
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 3.7e-44 183.0 313 39.0
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 4.9e-44 182.6 316 38.0
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 8.3e-44 181.8 308 40.6
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.9e-43 180.6 305 41.6
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 2.4e-43 180.3 309 43.0
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 3.2e-43 179.9 307 42.7
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 4.6e-42 176.0 245 44.1
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.3e-41 174.5 275 40.0
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.7e-41 174.1 309 39.5
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.7e-41 174.1 309 39.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 5.1e-41 172.6 314 40.8
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 3.3e-40 169.9 246 42.7
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 4.0e-38 162.9 317 35.6
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 5.4e-35 152.5 279 36.9
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-34 151.0 309 37.5
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 1.0e-33 148.3 321 34.3
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.7e-33 147.5 310 36.1
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.7e-33 147.5 310 36.1
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.3e-33 147.1 197 45.2
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 3.9e-33 146.4 304 35.2
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 5.1e-33 146.0 319 37.3
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.5e-32 143.7 320 36.2
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 2.5e-32 143.7 316 33.9
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 5.6e-32 142.5 320 35.6
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.4e-30 137.9 292 37.3
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 6.8e-30 135.6 307 34.2
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 1.2e-29 134.8 312 34.3
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.2e-29 134.8 192 42.2
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 2.0e-29 134.0 319 33.5
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 2.0e-29 134.0 319 33.5
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.9e-28 130.2 317 32.8
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.6e-23 114.4 261 33.7
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.6e-23 113.2 287 32.8
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 6.2e-23 112.5 258 32.6
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.4e-22 111.3 110 51.8
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 3.4e-21 106.7 249 32.5
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 3.4e-21 106.7 289 29.4
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 5.8e-21 105.9 276 33.7
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 7.6e-21 105.5 371 29.4
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.4e-19 100.5 289 27.0
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.0e-17 95.1 310 29.4
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 1.5e-13 81.3 269 27.9
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.0e-13 80.9 91 48.4
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 1.7e-12 77.8 304 23.4
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 2.4e-11 73.9 147 38.1
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 3.5e-10 70.1 132 37.9
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 4.6e-10 69.7 67 55.2
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 4.6e-10 69.7 67 55.2
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 6.0e-10 69.3 65 55.4
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 7.9e-10 68.9 243 24.3
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.0e-09 67.0 288 24.7
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.9e-08 64.3 243 23.5
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 5.6e-08 62.8 89 40.4
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.3e-07 61.6 89 40.4
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 3.7e-07 60.1 45 68.9


User provided reference genes

Program Settings