Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 7.6e-308 1059.7 542 100.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.8e-277 958.7 546 90.1
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 2.3e-264 915.2 542 85.4
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 3.3e-250 868.2 539 81.8
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.1e-248 861.7 544 83.1
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 2.2e-246 855.5 542 81.4
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.5e-242 842.0 545 80.0
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 9.5e-242 840.1 544 79.2
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.9e-238 828.6 540 78.3
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-232 809.7 544 77.6
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 4.0e-232 808.1 544 77.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 6.2e-225 784.3 542 75.8
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.6e-220 769.6 543 74.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 4.9e-214 748.0 540 70.0
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 4.3e-210 734.9 540 69.8
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.6e-209 731.9 540 69.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.4e-208 729.9 540 69.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 3.0e-203 712.2 545 66.1
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.3e-202 708.4 539 67.3
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.1e-200 703.7 545 65.3
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.4e-200 703.4 548 65.3
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.1e-200 702.2 542 67.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.1e-200 702.2 542 67.2
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 5.3e-200 701.4 541 65.8
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.5e-197 692.6 545 67.2
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.2e-196 690.3 543 66.7
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 5.1e-195 684.9 540 64.8
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 5.7e-194 681.4 541 64.7
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 4.8e-193 678.3 542 66.4
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 4.8e-193 678.3 548 63.5
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 6.3e-193 677.9 521 64.9
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.8e-192 676.4 548 63.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.5e-191 671.8 540 64.3
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 5.9e-191 671.4 540 63.7
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 7.6e-191 671.0 542 63.1
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.2e-190 669.5 521 64.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.8e-190 668.7 539 63.6
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 8.4e-190 667.5 544 62.1
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.1e-189 667.2 519 64.7
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 1.4e-189 666.8 538 62.3
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.9e-189 666.4 541 63.4
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 9.3e-189 664.1 541 62.1
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.6e-188 663.3 539 63.5
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 3.5e-188 662.1 539 62.3
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.0e-187 659.1 539 64.0
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 5.1e-187 658.3 504 66.1
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.9e-186 656.4 546 62.8
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 4.3e-186 655.2 538 63.6
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 9.7e-186 654.1 542 62.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 6.3e-185 651.4 543 62.8
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.6e-183 646.0 546 61.4
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 5.9e-183 644.8 540 61.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 3.8e-182 642.1 543 62.6
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.5e-182 641.0 521 63.0
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.5e-181 639.4 533 60.4
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-181 639.4 521 62.6
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.5e-181 638.3 521 62.6
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 7.2e-181 637.9 540 61.9
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.7e-180 636.0 537 61.3
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 4.6e-180 635.2 543 62.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.6e-180 635.2 521 62.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.1e-180 634.8 521 62.0
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 6.1e-180 634.8 544 60.3
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.9e-180 634.4 543 61.1
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 3.3e-178 629.0 540 60.9
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.3e-177 627.1 540 60.7
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.3e-177 627.1 540 60.7
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 2.2e-177 626.3 540 60.7
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 4.8e-177 625.2 540 59.4
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.1e-176 624.0 542 57.9
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.4e-176 622.9 529 61.6
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 9.1e-176 620.9 527 61.5
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.2e-175 620.5 540 59.8
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-175 619.4 522 61.3
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 4.5e-175 618.6 530 61.3
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 2.2e-174 616.3 541 57.3
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.2e-174 616.3 541 59.1
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 2.2e-174 616.3 527 60.0
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.6e-172 610.1 546 59.2
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.6e-172 609.0 539 57.1
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 7.9e-172 607.8 539 57.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 2.3e-171 606.3 540 57.0
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 8.8e-171 604.4 534 58.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.6e-170 602.8 540 56.9
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 7.4e-170 601.3 540 56.5
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.7e-169 600.1 540 56.9
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 2.2e-169 599.7 530 57.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 2.8e-169 599.4 540 56.7
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.8e-168 596.7 549 56.6
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.6e-167 593.6 514 60.9
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 8.5e-166 587.8 498 62.2
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.2e-164 583.9 531 57.3
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 8.8e-163 577.8 547 55.4
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.3e-162 575.9 540 55.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 4.4e-162 575.5 543 56.9
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 8.5e-158 561.2 545 54.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.1e-157 560.8 541 54.0
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 7.5e-154 548.1 546 53.8
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.4e-152 543.9 549 54.3
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.1e-149 534.3 416 65.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 4.0e-147 525.8 421 68.4
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 6.8e-139 498.4 422 59.5
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 7.8e-135 485.0 411 58.6
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-134 484.2 320 77.2
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.3e-129 467.6 424 59.0
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 9.2e-128 461.5 501 49.9
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 2.0e-127 460.3 422 62.1
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 6.0e-127 458.8 548 47.6
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.3e-118 431.0 356 60.1
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 6.2e-116 422.2 493 48.9
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.4e-115 421.0 569 40.6
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 7.3e-109 398.7 466 47.2
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 3.6e-108 396.4 272 76.5
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.2e-105 387.1 543 43.3
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.2e-103 381.3 351 57.5
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 8.1e-100 368.6 501 40.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.9e-93 347.4 500 38.6
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.8e-91 340.9 516 39.3
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.2e-87 328.2 264 61.0
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.8e-86 324.3 317 55.5
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 4.3e-85 319.7 490 37.1
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-82 311.6 500 39.2
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.6e-82 310.5 500 38.6
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.9e-81 307.0 348 50.9
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.6e-74 283.9 229 69.0
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.0e-73 282.0 212 72.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 5.2e-54 216.5 249 47.4
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 9.7e-53 212.2 123 87.0
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-37 162.2 111 74.8
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.6e-37 161.0 165 56.4
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.2e-34 152.1 206 48.5
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.8e-33 147.1 103 66.0
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 8.8e-30 136.0 504 28.8
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 4.4e-29 133.7 130 56.9
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.4e-29 133.7 102 60.8
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 4.4e-29 133.7 452 28.5
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 5.7e-29 133.3 589 24.6
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 3.7e-28 130.6 95 63.2
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 5.4e-27 126.7 90 70.0
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 2.7e-26 124.4 115 54.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 7.8e-26 122.9 88 69.3
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.0e-25 122.5 110 56.4
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 3.5e-18 97.4 334 25.7
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.3e-14 84.7 115 41.7
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.9e-12 77.0 86 41.9
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 8.3e-12 76.3 120 40.0
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.9e-09 67.4 62 53.2
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 1.9e-08 65.1 494 21.1
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 2.5e-08 64.7 61 55.7
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 8.1e-07 59.7 514 23.2


User provided reference genes

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