Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 9.4e-72 273.5 144 100.0
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 2.9e-52 208.8 144 77.8
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 3.7e-52 208.4 143 77.6
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 7.5e-45 184.1 130 76.9
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 2.2e-44 182.6 144 70.1
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 2.9e-44 182.2 144 68.8
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 2.7e-42 175.6 144 67.4
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 4.3e-40 168.3 144 66.7
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 3.6e-39 165.2 154 60.4
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 4.7e-39 164.9 144 63.2
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 3.2e-35 152.1 190 50.5
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 2.4e-30 136.0 128 60.9
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.3e-25 119.4 145 51.0
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 3.9e-25 118.6 151 47.7
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 5.1e-25 118.2 125 52.0
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 6.6e-25 117.9 146 51.4
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 1.5e-24 116.7 127 50.4
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 9.6e-24 114.0 133 48.9
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 1.2e-23 113.6 127 52.0
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 2.1e-23 112.8 145 47.6
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 2.1e-23 112.8 139 50.4
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.7e-23 111.7 133 47.4
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 4.7e-23 111.7 136 47.8
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 8.1e-23 110.9 149 47.0
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 8.1e-23 110.9 133 46.6
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 1.4e-22 110.2 151 45.0
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.8e-22 109.8 155 46.5
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 3.1e-22 109.0 147 45.6
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 4.0e-22 108.6 144 46.5
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 1.2e-21 107.1 147 45.6
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 5.8e-21 104.8 132 48.5
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 9.9e-21 104.0 140 47.9
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.7e-20 103.2 116 53.4
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.7e-20 103.2 153 43.8
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.7e-20 103.2 137 44.5
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 1.7e-20 103.2 152 45.4
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 2.2e-20 102.8 129 47.3
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 2.2e-20 102.8 139 47.5
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 2.2e-20 102.8 144 45.8
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 2.2e-20 102.8 149 46.3
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 3.8e-20 102.1 192 39.6
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 8.4e-20 100.9 154 42.9
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 1.1e-19 100.5 144 45.8
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 1.4e-19 100.1 143 44.8
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 2.4e-19 99.4 138 43.5
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 2.4e-19 99.4 147 42.9
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 2.4e-19 99.4 149 45.6
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 3.2e-19 99.0 150 42.7
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 9.3e-19 97.4 136 43.4
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 9.3e-19 97.4 126 42.1
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 1.2e-18 97.1 126 46.8
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 1.6e-18 96.7 129 47.3
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 2.1e-18 96.3 150 43.3
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 2.7e-18 95.9 176 41.5
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 7.8e-18 94.4 158 38.6
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 7.8e-18 94.4 131 43.5
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.7e-17 93.2 128 46.1
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 3.9e-17 92.0 126 47.6
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 3.9e-17 92.0 132 43.2
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 5.1e-17 91.7 125 48.0
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 5.1e-17 91.7 136 43.4
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.6e-17 91.3 128 45.3
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 1.5e-16 90.1 123 45.5
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.5e-16 90.1 125 47.2
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.9e-16 89.7 125 47.2
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 2.5e-16 89.4 135 42.2
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 4.3e-16 88.6 127 39.4
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.3e-16 88.6 125 47.2
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 4.3e-16 88.6 135 45.2
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 7.3e-16 87.8 143 38.5
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 9.6e-16 87.4 138 40.6
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 1.3e-15 87.0 124 36.3
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 1.3e-15 87.0 143 39.9
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.3e-15 87.0 116 41.4
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 1.6e-15 86.7 123 36.6
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.6e-15 86.7 137 39.4
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.6e-15 86.7 136 41.2
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 3.6e-15 85.5 135 38.5
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 4.8e-15 85.1 151 35.8
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 4.8e-15 85.1 141 42.6
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 1.4e-14 83.6 135 37.0
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 1.8e-14 83.2 143 38.5
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 3.1e-14 82.4 131 39.7
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 6.9e-14 81.3 133 39.1
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 6.9e-14 81.3 116 39.7
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.0e-13 79.7 130 39.2
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 2.0e-13 79.7 119 42.9
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 2.6e-13 79.3 123 35.8
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 2.6e-13 79.3 123 35.8
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 2.6e-13 79.3 123 35.8
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 2.6e-13 79.3 142 40.8
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 3.4e-13 79.0 114 44.7
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 4.5e-13 78.6 112 45.5
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 5.8e-13 78.2 131 36.6
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 5.8e-13 78.2 111 45.0
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 1.3e-12 77.0 120 40.0
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 1.3e-12 77.0 114 43.9
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 2.9e-12 75.9 144 36.1
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 3.8e-12 75.5 134 33.6
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 3.8e-12 75.5 112 46.4
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 6.4e-12 74.7 124 38.7
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.1e-11 73.9 118 42.4
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 2.7e-10 69.3 215 30.7
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 4.6e-10 68.6 125 34.4
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 1.0e-09 67.4 130 33.8
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.0e-09 67.4 124 37.1
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 2.3e-09 66.2 108 42.6
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 8.7e-09 64.3 130 28.5
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 8.7e-09 64.3 125 36.0
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 1.9e-08 63.2 123 32.5
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 2.5e-08 62.8 139 28.8
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 9.6e-08 60.8 133 32.3
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 1.6e-07 60.1 203 28.6
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.1e-07 59.7 107 40.2
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 8.1e-07 57.8 182 29.1
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.8e-06 56.6 69 49.3
CARHR248680 Cardamine hirsuta HOM05D006065 ORTHO05D007672 4.0e-06 55.5 134 30.6
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 6.9e-06 54.7 90 40.0


User provided reference genes

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