Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 5.6e-48 193.7 85 100.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 3.8e-44 181.0 85 94.1
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.9e-43 178.7 85 92.9
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 5.1e-41 170.6 87 86.2
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 5.6e-40 167.2 83 89.2
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.6e-39 165.6 85 84.7
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 5.3e-38 160.6 83 81.9
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.0e-37 158.7 87 80.5
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 4.5e-37 157.5 83 80.7
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 5.8e-37 157.1 82 85.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 9.9e-37 156.4 85 78.8
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 9.9e-37 156.4 85 78.8
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 9.9e-37 156.4 87 79.3
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.3e-36 156.0 82 81.7
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.7e-36 155.6 84 81.0
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.2e-36 155.2 83 79.5
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.2e-36 155.2 86 83.7
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.8e-36 154.5 88 78.4
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 8.4e-36 153.3 84 79.8
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 8.4e-36 153.3 83 79.5
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.1e-35 152.9 82 79.3
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.4e-35 152.5 82 82.9
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 2.4e-35 151.8 82 81.7
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 2.4e-35 151.8 85 78.8
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 3.2e-35 151.4 84 78.6
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.2e-35 151.4 85 81.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.2e-35 151.0 83 79.5
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 5.4e-35 150.6 85 82.4
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.4e-35 150.6 83 78.3
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 7.1e-35 150.2 84 79.8
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 7.1e-35 150.2 87 74.7
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 7.1e-35 150.2 83 77.1
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.3e-35 149.8 81 79.0
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 9.3e-35 149.8 81 79.0
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.2e-34 149.4 86 76.7
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.6e-34 149.1 85 77.6
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-34 148.7 84 81.0
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-34 148.7 84 81.0
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-34 148.7 84 81.0
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 2.1e-34 148.7 84 77.4
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.7e-34 148.3 87 75.9
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 2.7e-34 148.3 81 77.8
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.7e-34 148.3 87 72.4
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 4.6e-34 147.5 81 81.5
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 7.9e-34 146.7 81 81.5
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 7.9e-34 146.7 84 81.0
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 7.9e-34 146.7 84 81.0
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.0e-33 146.4 84 77.4
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.0e-33 146.4 83 74.7
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-33 146.4 85 77.6
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.3e-33 146.0 88 73.9
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.3e-33 146.0 81 76.5
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.3e-33 146.0 81 74.1
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.3e-33 146.0 88 73.9
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.3e-33 146.0 81 79.0
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-33 145.6 82 79.3
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.8e-33 145.6 82 79.3
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.3e-33 145.2 83 74.7
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 3.0e-33 144.8 83 72.3
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 3.0e-33 144.8 84 77.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.1e-33 144.1 82 75.6
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 6.7e-33 143.7 83 74.7
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 6.7e-33 143.7 81 76.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 6.7e-33 143.7 85 76.5
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 8.7e-33 143.3 80 80.0
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 8.7e-33 143.3 80 80.0
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 8.7e-33 143.3 83 74.7
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 8.7e-33 143.3 83 75.9
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 8.7e-33 143.3 83 78.3
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.1e-32 142.9 83 75.9
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.5e-32 142.5 87 71.3
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.5e-32 142.5 80 73.8
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.9e-32 142.1 83 73.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.9e-32 142.1 85 74.1
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 3.3e-32 141.4 84 73.8
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.3e-32 141.0 86 73.3
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 5.6e-32 140.6 83 73.5
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 5.6e-32 140.6 85 75.3
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 5.6e-32 140.6 81 76.5
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.4e-32 140.2 87 73.6
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 9.6e-32 139.8 86 72.1
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 9.6e-32 139.8 82 76.8
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.6e-31 139.0 89 71.9
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.8e-31 138.3 88 72.7
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 3.7e-31 137.9 85 74.1
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.7e-31 137.9 83 74.7
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 4.8e-31 137.5 82 75.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 4.8e-31 137.5 82 76.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 4.8e-31 137.5 82 76.8
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 4.8e-31 137.5 81 71.6
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 6.2e-31 137.1 82 76.8
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 8.1e-31 136.7 82 75.6
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.4e-30 136.0 80 72.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.4e-30 136.0 80 72.5
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.4e-30 135.2 80 73.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.4e-30 135.2 80 73.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.4e-30 135.2 80 73.8
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 3.1e-30 134.8 82 73.2
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 3.1e-30 134.8 82 75.6
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 9.0e-30 133.3 83 69.9
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.5e-29 132.5 80 73.8
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.0e-29 132.1 82 73.2
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.0e-29 132.1 81 70.4
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 4.5e-29 131.0 62 87.1
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 5.8e-29 130.6 83 68.7
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 7.6e-29 130.2 82 73.2
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 7.6e-29 130.2 77 74.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.8e-28 127.9 83 71.1
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 7.1e-27 123.6 98 61.2
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.8e-25 119.0 62 80.6
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 8.7e-25 116.7 153 41.8
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 4.5e-21 104.4 63 76.2
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.3e-20 102.8 79 59.5
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 1.1e-19 99.8 80 58.8
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.1e-19 99.8 61 62.3
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 1.4e-19 99.4 62 74.2
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.5e-19 98.6 66 71.2
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 4.2e-19 97.8 61 72.1
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.2e-19 97.8 62 72.6
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 9.3e-19 96.7 58 77.6
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.1e-18 95.5 63 71.4
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 6.0e-18 94.0 63 69.8
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-17 93.2 62 71.0
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.3e-17 92.8 61 70.5
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 1.8e-17 92.4 59 67.8
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-17 91.7 59 74.6
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-17 91.7 59 74.6
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 3.0e-17 91.7 57 71.9
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 8.7e-17 90.1 63 68.3
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.1e-16 89.7 60 66.7
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 3.3e-16 88.2 76 55.3
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.3e-16 87.8 59 66.1
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 7.4e-16 87.0 59 69.5
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.3e-15 86.3 59 69.5
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.6e-15 85.9 64 64.1
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.8e-15 84.3 49 75.5
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.8e-15 84.3 59 67.8
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 4.8e-15 84.3 60 66.7
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.4e-14 82.0 63 61.9
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.1e-14 81.3 62 62.9
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 9.0e-14 80.1 67 52.2
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 7.7e-13 77.0 62 61.3
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.0e-12 76.6 62 62.9
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.0e-12 74.3 64 54.7
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.5e-12 73.9 39 82.1


User provided reference genes

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