Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 2.7e-52 208.8 137 100.0
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 6.7e-35 151.0 153 61.4
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 1.1e-32 143.7 147 61.9
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 2.6e-31 139.0 76 86.8
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 4.8e-25 118.2 152 53.3
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 3.5e-23 112.1 70 74.3
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 3.5e-23 112.1 70 74.3
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 1.5e-21 106.7 74 70.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.9e-21 106.3 68 72.1
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.9e-21 106.3 72 70.8
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 2.5e-21 105.9 75 68.0
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 3.2e-21 105.5 65 73.8
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 5.5e-21 104.8 74 66.2
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 9.4e-21 104.0 71 67.6
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 9.4e-21 104.0 71 67.6
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 2.1e-20 102.8 73 69.9
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 2.7e-20 102.4 71 67.6
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 2.7e-20 102.4 74 64.9
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 4.7e-20 101.7 72 65.3
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.8e-19 99.8 73 63.0
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 2.3e-19 99.4 71 63.4
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 2.3e-19 99.4 135 42.2
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 3.0e-19 99.0 77 59.7
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 5.2e-19 98.2 71 60.6
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 6.8e-19 97.8 72 63.9
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 6.8e-19 97.8 73 61.6
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 8.8e-19 97.4 69 63.8
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 8.8e-19 97.4 77 59.7
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 1.2e-18 97.1 72 63.9
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 1.5e-18 96.7 71 64.8
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.5e-18 96.7 71 63.4
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.5e-18 96.7 71 63.4
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 1.5e-18 96.7 68 64.7
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 2.6e-18 95.9 69 65.2
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 2.6e-18 95.9 74 60.8
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 4.4e-18 95.1 75 60.0
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 5.7e-18 94.7 74 60.8
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 7.5e-18 94.4 75 60.0
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 7.5e-18 94.4 63 68.3
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 9.7e-18 94.0 71 63.4
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 2.2e-17 92.8 73 63.0
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 3.7e-17 92.0 76 59.2
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 4.8e-17 91.7 72 62.5
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 4.8e-17 91.7 67 65.7
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 6.3e-17 91.3 74 55.4
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 8.3e-17 90.9 74 63.5
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 8.3e-17 90.9 74 54.1
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.1e-16 90.5 72 61.1
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 1.1e-16 90.5 76 57.9
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 1.1e-16 90.5 76 57.9
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.1e-16 90.5 72 59.7
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 1.1e-16 90.5 67 64.2
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 1.8e-16 89.7 69 60.9
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 4.1e-16 88.6 73 63.0
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 4.1e-16 88.6 71 60.6
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 5.3e-16 88.2 73 63.0
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.3e-16 88.2 73 63.0
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.3e-16 88.2 73 63.0
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.3e-16 88.2 73 63.0
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.3e-16 88.2 73 63.0
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 5.3e-16 88.2 71 59.2
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 5.3e-16 88.2 70 60.0
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 7.0e-16 87.8 76 56.6
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 1.2e-15 87.0 72 59.7
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 1.6e-15 86.7 65 64.6
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.6e-15 86.7 73 63.0
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 1.6e-15 86.7 70 61.4
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 2.0e-15 86.3 74 54.1
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 2.0e-15 86.3 63 66.7
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 2.7e-15 85.9 65 63.1
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 2.7e-15 85.9 70 57.1
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 2.7e-15 85.9 70 60.0
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 3.5e-15 85.5 67 59.7
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 3.5e-15 85.5 70 60.0
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 4.5e-15 85.1 73 58.9
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 4.5e-15 85.1 73 57.5
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 7.7e-15 84.3 68 60.3
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 1.0e-14 84.0 60 66.7
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.0e-14 84.0 60 66.7
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.0e-14 84.0 60 66.7
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 1.0e-14 84.0 60 66.7
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.0e-14 84.0 60 66.7
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.0e-14 84.0 83 55.4
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.7e-14 83.2 65 61.5
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 1.7e-14 83.2 66 59.1
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 2.2e-14 82.8 68 58.8
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 2.2e-14 82.8 66 57.6
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 2.9e-14 82.4 60 63.3
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 2.9e-14 82.4 68 58.8
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 2.9e-14 82.4 63 63.5
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 5.0e-14 81.6 67 64.2
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 5.0e-14 81.6 67 64.2
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 6.5e-14 81.3 56 66.1
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 6.5e-14 81.3 60 65.0
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 6.5e-14 81.3 66 56.1
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 1.5e-13 80.1 56 66.1
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 1.5e-13 80.1 62 61.3
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 3.2e-13 79.0 65 58.5
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 4.2e-13 78.6 69 55.1
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 4.2e-13 78.6 69 55.1
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 2.1e-12 76.3 61 63.9
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 2.7e-12 75.9 61 62.3
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 6.1e-12 74.7 61 63.9
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 8.0e-12 74.3 99 42.4
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 5.2e-11 71.6 74 51.4
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 1.2e-10 70.5 61 62.3
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 3.4e-10 68.9 69 53.6
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 3.4e-10 68.9 69 53.6
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 3.4e-10 68.9 64 54.7
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 6.3e-09 64.7 74 47.3
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 1.6e-07 60.1 62 54.8
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 6.6e-06 54.7 74 45.9


User provided reference genes

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